Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   C2860_RS07210 Genome accession   NZ_CP026656
Coordinates   1378674..1380515 (+) Length   613 a.a.
NCBI ID   WP_148571350.1    Uniprot ID   -
Organism   Aliarcobacter cryaerophilus strain M830MA     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1373674..1385515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2860_RS07200 - 1374299..1375336 (+) 1038 WP_148571346.1 efflux RND transporter periplasmic adaptor subunit -
  C2860_RS07205 - 1375339..1378491 (+) 3153 WP_148571348.1 efflux RND transporter permease subunit -
  C2860_RS07210 uvrC 1378674..1380515 (+) 1842 WP_148571350.1 excinuclease ABC subunit UvrC Machinery gene
  C2860_RS07215 - 1380508..1381539 (+) 1032 WP_148571352.1 alanine racemase -
  C2860_RS07220 - 1381567..1382694 (-) 1128 WP_148571354.1 iron-containing alcohol dehydrogenase -
  C2860_RS07225 - 1382733..1383917 (-) 1185 WP_222860966.1 MFS transporter -
  C2860_RS07230 - 1383928..1384344 (-) 417 WP_148571355.1 cyclophilin-like fold protein -
  C2860_RS07235 - 1384354..1385475 (-) 1122 WP_148571357.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71266.42 Da        Isoelectric Point: 9.1014

>NTDB_id=271288 C2860_RS07210 WP_148571350.1 1378674..1380515(+) (uvrC) [Aliarcobacter cryaerophilus strain M830MA]
MNLEEKLKELPNDSGVYQYFDENGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMISETTFVEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIYVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
IKGKSACLFYQIGKCKAPCEQKITQEEYKKLLDEALSYIYNKSKLLSKLKEKMKIYSDDFRFEDALNLRDRVKTIEKSEI
KTGIDLATNEDLDIFAIKSASKKAVIVRMFIRDGKLASSNYDFIKINDDLEFDLNEAYKRAIVNYYSNELPIIPKEIIVA
DEILDLDDIEEFLYKKFNKKIKVINPKIDKKASIVKIALNNCDELLRIEASKNQTTIYEELKELFCLQTTPSLIESFDNS
HLMGQATAGAMIVWNENLGSFDKKAFRHYNLESKDEYSQMREMLIRRVESFSKNPAPDLWIIDGGETLLKLAFDIVQSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFRKNGEYKSLNLLTSDKRLQFIQRQRDEAHRFAISFHKKQKRKEDKEISFL
QINGIGEAKIKKLLLYFGEFEKIKNASLDELKAVLNEVDSKNIFDYFRKEENG

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=271288 C2860_RS07210 WP_148571350.1 1378674..1380515(+) (uvrC) [Aliarcobacter cryaerophilus strain M830MA]
ATGAATTTAGAAGAGAAATTAAAAGAGTTACCAAATGATTCTGGTGTTTATCAATATTTTGATGAAAACGGTCATTTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTAAAATCTTATTTCAAATTTACTCCAAAACTCTTACCTGCTGATA
AACTAAGTCCACGAATATATAAAATGATTAGTGAAACTACTTTTGTAGAGTGGATTGTTGTTCCAAATGAACATGATGCT
TTAATACTTGAAAACTCTTTAATAAAACAACTAAAACCAAAATACAATGTACTTTTAAGAGATGATAAAACCTATCCATA
TATTTATGTTGATTTAAATGAAGATTTTCCAAGACTTGAAATAACAAGAAAAATAGAAAAAGGTAAAAATATAAAATATT
TTGGTCCATACTCAAGTGGAGCAAAAGATATGTTAGATAGCATATATGAAATAGTTCCATTGGTACAAAAAAAATCTTGT
ATAAAAGGAAAGAGTGCTTGTCTATTTTACCAAATAGGAAAATGTAAAGCTCCTTGTGAGCAAAAAATAACACAAGAAGA
GTATAAAAAACTTTTAGATGAAGCTTTAAGCTATATATATAATAAATCAAAACTTTTATCAAAACTAAAAGAGAAGATGA
AAATATATTCAGATGATTTTCGTTTTGAAGATGCTTTAAATTTAAGAGATAGAGTAAAAACTATTGAAAAATCTGAAATT
AAAACAGGTATAGATTTAGCAACAAATGAAGATTTGGATATATTTGCTATAAAATCTGCTAGTAAAAAAGCTGTGATTGT
AAGAATGTTTATAAGGGATGGAAAACTTGCATCTTCAAATTATGATTTTATAAAGATAAATGATGATTTAGAGTTTGATT
TAAATGAAGCATATAAAAGAGCAATTGTAAACTACTACTCAAATGAACTTCCAATTATTCCAAAAGAGATTATTGTAGCT
GATGAAATTTTGGATTTAGATGACATTGAAGAGTTTTTATATAAAAAATTTAATAAAAAAATAAAAGTAATAAATCCAAA
AATAGATAAAAAAGCTAGTATTGTAAAAATTGCATTAAACAATTGCGATGAACTTCTACGAATTGAAGCTTCAAAAAATC
AAACAACTATATATGAAGAGTTAAAAGAACTATTTTGCCTACAAACAACTCCTAGTTTAATAGAAAGTTTTGACAATTCT
CATTTGATGGGACAAGCAACAGCTGGAGCTATGATTGTTTGGAATGAAAATTTAGGCTCTTTTGATAAAAAAGCTTTTAG
ACACTATAACCTTGAATCAAAAGATGAATATTCACAAATGAGAGAGATGTTAATAAGAAGAGTTGAAAGCTTTTCAAAAA
ATCCTGCTCCTGATTTATGGATTATTGATGGTGGAGAAACTTTGCTAAAACTAGCATTTGATATTGTACAAAGTATTGGG
GTAAATTTAGATATTATTGCAATTTCAAAACAAAAAGTAGATGCCAAAGCATATAGAGCAAAAGGAAATGCGAAAGATAT
AGTCCATTTTAGAAAAAATGGTGAATACAAAAGCTTAAATCTTCTTACAAGTGATAAAAGATTACAGTTTATTCAAAGAC
AAAGAGACGAAGCCCATAGATTTGCTATTAGTTTTCATAAAAAACAAAAAAGAAAAGAGGATAAAGAGATATCCTTTTTA
CAAATAAATGGAATAGGTGAAGCAAAAATAAAAAAACTTCTTTTGTATTTTGGAGAGTTTGAAAAGATAAAAAATGCAAG
TTTAGATGAGCTAAAAGCTGTTTTAAATGAAGTTGATTCAAAAAATATATTTGATTATTTTAGAAAGGAAGAGAATGGCT
AG

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-543)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.342

97.227

0.499

Multiple sequence alignment