Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C2860_RS04925 Genome accession   NZ_CP026656
Coordinates   949224..950573 (-) Length   449 a.a.
NCBI ID   WP_066157124.1    Uniprot ID   A0AA96DU37
Organism   Aliarcobacter cryaerophilus strain M830MA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 944224..955573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2860_RS04900 murJ 944818..946149 (-) 1332 WP_148571176.1 murein biosynthesis integral membrane protein MurJ -
  C2860_RS04905 - 946146..947720 (-) 1575 WP_148571178.1 endonuclease/exonuclease/phosphatase family protein -
  C2860_RS04910 - 947901..948308 (+) 408 WP_066168935.1 Fur family transcriptional regulator -
  C2860_RS04915 ybeY 948310..948729 (-) 420 WP_066157117.1 rRNA maturation RNase YbeY -
  C2860_RS04920 - 948795..949208 (+) 414 WP_105925854.1 thioesterase family protein -
  C2860_RS04925 radA 949224..950573 (-) 1350 WP_066157124.1 DNA repair protein RadA Machinery gene
  C2860_RS04930 polA 950713..953397 (+) 2685 WP_148571180.1 DNA polymerase I -
  C2860_RS04935 - 953440..954417 (+) 978 WP_148571182.1 calcium/sodium antiporter -
  C2860_RS04940 - 954498..955007 (+) 510 WP_066359025.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49375.74 Da        Isoelectric Point: 6.5124

>NTDB_id=271287 C2860_RS04925 WP_066157124.1 949224..950573(-) (radA) [Aliarcobacter cryaerophilus strain M830MA]
MAKKKNTLFECQHCGEQSSKWLGKCPSCDSWDSFLELNEVQQEVLKQTITANSSSSKARPITEILQDDVSRFSSFNYEFD
LVLGGGVVPGSLTLIGGSPGVGKSTLLLKVAGSIAKSGKKVLYVSGEESAGQIKLRANRLDANHNELFLLSEIKLEEIMS
ELLRIDYEVCIIDSIQTIYSGHLNSSPGSVSQVREITFELMRKAKESNIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTQEGLVSAKDIASKFFDKSKSQSGSSLTVSMEGSRAIILEVQALVSETTFPN
PKRSATGFDTNRLTMLLALLEKKLDLPFNHYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDLRLKEAQAQGIKKAIIAQKTNLKLDLKTFAVDEVSKVIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=271287 C2860_RS04925 WP_066157124.1 949224..950573(-) (radA) [Aliarcobacter cryaerophilus strain M830MA]
ATGGCAAAGAAAAAAAATACTCTATTTGAGTGCCAACACTGTGGTGAACAATCTAGTAAATGGCTTGGAAAATGTCCTAG
TTGCGACTCTTGGGATAGTTTTCTAGAGTTAAATGAAGTACAACAAGAGGTTTTAAAACAAACCATAACAGCAAATAGTT
CTAGTTCAAAAGCAAGACCAATAACAGAGATTTTACAAGATGATGTTTCAAGATTTTCATCTTTTAATTATGAATTTGAT
TTAGTTTTAGGTGGAGGAGTTGTTCCTGGAAGTTTAACACTTATTGGAGGAAGCCCAGGAGTTGGAAAATCAACTCTTCT
TTTAAAAGTTGCAGGAAGTATTGCAAAGTCAGGCAAAAAAGTACTTTATGTATCAGGAGAAGAGAGTGCTGGACAGATAA
AACTAAGAGCAAATCGTCTTGATGCAAACCACAATGAACTTTTCTTATTAAGTGAGATAAAACTTGAAGAGATTATGAGT
GAACTTCTTAGAATTGATTATGAAGTTTGTATTATTGACTCAATTCAAACAATATATTCAGGTCATTTAAACTCAAGTCC
TGGAAGTGTTTCACAAGTTCGAGAGATTACTTTTGAACTTATGAGAAAAGCAAAAGAGTCAAATATTGCTATGTTTATAA
TTGGTCATATTACAAAAGATGGAAGCATCGCAGGTCCTAGAGTGTTAGAACATATGGTTGATACAGTTTTATACTTCGAA
GGAGAAGCAAGCAGGGAACTAAGAATGCTAAGAGGTTTCAAAAATAGGTTTGGTTCAACTTCAGAAATTGGAATTTTTGA
GATGACACAAGAAGGACTTGTAAGTGCAAAAGATATAGCATCAAAGTTTTTTGATAAAAGCAAAAGTCAAAGTGGTTCAA
GTTTAACTGTTAGTATGGAAGGAAGCCGTGCAATTATTCTTGAAGTTCAAGCACTTGTAAGCGAAACAACTTTTCCAAAT
CCAAAAAGAAGTGCCACAGGTTTTGATACAAACCGTTTAACTATGCTTTTAGCTCTTTTAGAGAAAAAATTAGACTTACC
TTTTAATCATTATGATGTGTTTATAAATATTAGTGGTGGAATAAAGATTAAAGAGAGTAGTGCTGATTTAGCAGTAATTG
CTGCAATAATTTCAAGTTTTAGAGATAGACCAATTTCAAAAGAGTCTGTATTTATTGGTGAAGTTTCACTAACTGGTGAA
ATAAAAGATGTTTATTCTATAGATTTAAGATTAAAAGAGGCTCAAGCTCAAGGAATTAAAAAAGCAATAATTGCGCAAAA
AACGAATCTAAAATTAGATTTAAAAACTTTTGCAGTTGATGAAGTATCAAAAGTAATAGAGCTTTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-34)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.788

100

0.481
  radA Streptococcus pneumoniae Rx1

47.788

100

0.481
  radA Streptococcus pneumoniae D39

47.788

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.788

100

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

50.35

95.546

0.481
  radA Streptococcus mitis SK321

47.566

100

0.479
  radA Streptococcus mitis NCTC 12261

49.65

95.546

0.474

Multiple sequence alignment