Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C3B42_RS06045 Genome accession   NZ_CP026655
Coordinates   1202686..1204035 (+) Length   449 a.a.
NCBI ID   WP_066157124.1    Uniprot ID   A0AA96DU37
Organism   Aliarcobacter cryaerophilus strain G13RTA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1197686..1209035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3B42_RS06030 - 1198252..1198761 (-) 510 WP_066157132.1 hypothetical protein -
  C3B42_RS06035 - 1198842..1199819 (-) 978 WP_141054229.1 calcium/sodium antiporter -
  C3B42_RS06040 polA 1199862..1202546 (-) 2685 WP_164469585.1 DNA polymerase I -
  C3B42_RS06045 radA 1202686..1204035 (+) 1350 WP_066157124.1 DNA repair protein RadA Machinery gene
  C3B42_RS06050 - 1204051..1204464 (-) 414 WP_066359036.1 thioesterase family protein -
  C3B42_RS06055 ybeY 1204530..1204949 (+) 420 WP_164469586.1 rRNA maturation RNase YbeY -
  C3B42_RS06060 - 1204951..1205358 (-) 408 WP_164469587.1 Fur family transcriptional regulator -
  C3B42_RS06065 - 1205539..1206666 (+) 1128 WP_228277244.1 endonuclease/exonuclease/phosphatase family protein -
  C3B42_RS11295 - 1207002..1207136 (+) 135 WP_266095979.1 hypothetical protein -
  C3B42_RS06070 murJ 1207133..1208476 (+) 1344 WP_164469588.1 murein biosynthesis integral membrane protein MurJ -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49375.74 Da        Isoelectric Point: 6.5124

>NTDB_id=271278 C3B42_RS06045 WP_066157124.1 1202686..1204035(+) (radA) [Aliarcobacter cryaerophilus strain G13RTA]
MAKKKNTLFECQHCGEQSSKWLGKCPSCDSWDSFLELNEVQQEVLKQTITANSSSSKARPITEILQDDVSRFSSFNYEFD
LVLGGGVVPGSLTLIGGSPGVGKSTLLLKVAGSIAKSGKKVLYVSGEESAGQIKLRANRLDANHNELFLLSEIKLEEIMS
ELLRIDYEVCIIDSIQTIYSGHLNSSPGSVSQVREITFELMRKAKESNIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTQEGLVSAKDIASKFFDKSKSQSGSSLTVSMEGSRAIILEVQALVSETTFPN
PKRSATGFDTNRLTMLLALLEKKLDLPFNHYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDLRLKEAQAQGIKKAIIAQKTNLKLDLKTFAVDEVSKVIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=271278 C3B42_RS06045 WP_066157124.1 1202686..1204035(+) (radA) [Aliarcobacter cryaerophilus strain G13RTA]
ATGGCAAAGAAAAAAAATACTCTCTTTGAGTGCCAACACTGTGGTGAGCAATCTAGTAAATGGCTTGGAAAATGTCCTAG
TTGCGACTCTTGGGATAGTTTTCTAGAGTTAAATGAAGTACAACAAGAGGTTTTAAAACAAACTATAACAGCAAATAGTT
CTAGTTCAAAAGCAAGACCAATAACAGAGATTTTGCAAGATGATGTTTCAAGATTTTCATCTTTTAATTATGAATTTGAT
TTAGTTTTAGGTGGAGGAGTTGTTCCTGGAAGTTTAACACTTATTGGAGGAAGCCCAGGAGTTGGAAAATCAACTCTTCT
TTTAAAAGTTGCAGGAAGTATTGCAAAGTCAGGTAAAAAAGTACTTTATGTATCAGGAGAAGAGAGTGCTGGACAGATAA
AACTAAGAGCAAATCGTCTTGATGCAAACCACAATGAACTGTTTTTATTAAGTGAGATAAAACTTGAAGAGATTATGAGT
GAACTTCTTAGAATTGATTATGAAGTTTGTATTATTGACTCAATTCAAACAATATATTCAGGTCATTTAAACTCAAGCCC
TGGAAGTGTTTCACAAGTTCGAGAGATTACTTTTGAGCTTATGAGAAAAGCAAAAGAGTCAAATATTGCTATGTTTATAA
TTGGTCATATTACAAAAGATGGAAGCATCGCAGGTCCTAGAGTGTTAGAACATATGGTTGATACAGTTTTATACTTCGAA
GGAGAAGCAAGCAGAGAACTAAGAATGTTAAGAGGTTTCAAAAATAGGTTTGGTTCAACTTCAGAAATTGGAATTTTTGA
GATGACACAAGAAGGACTTGTAAGTGCAAAAGATATAGCATCAAAATTTTTTGATAAAAGCAAAAGCCAAAGTGGTTCAA
GTTTAACTGTTAGTATGGAAGGAAGCCGTGCAATTATTCTTGAAGTTCAAGCACTTGTAAGCGAAACAACTTTTCCAAAT
CCAAAAAGAAGTGCCACTGGTTTTGATACAAACCGTTTAACTATGCTTTTAGCTCTTTTAGAGAAAAAATTAGACTTACC
TTTTAATCATTATGATGTGTTTATAAATATTAGTGGTGGAATAAAGATTAAAGAGAGTAGTGCTGATTTAGCAGTAATTG
CTGCAATTATCTCAAGTTTTAGAGATAGACCAATTTCAAAAGAGTCTGTATTTATTGGTGAAGTTTCACTAACTGGTGAA
ATAAAAGATGTTTATTCTATAGATTTAAGATTAAAAGAGGCTCAAGCTCAAGGAATTAAAAAAGCAATAATTGCTCAAAA
AACGAATCTAAAATTAGATTTAAAAACTTTTGCAGTTGATGAAGTATCAAAAGTAATAGAGCTTTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-34)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.788

100

0.481
  radA Streptococcus pneumoniae Rx1

47.788

100

0.481
  radA Streptococcus pneumoniae D39

47.788

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.788

100

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

50.35

95.546

0.481
  radA Streptococcus mitis SK321

47.566

100

0.479
  radA Streptococcus mitis NCTC 12261

49.65

95.546

0.474

Multiple sequence alignment