Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   C3B42_RS03970 Genome accession   NZ_CP026655
Coordinates   786629..788470 (-) Length   613 a.a.
NCBI ID   WP_164469337.1    Uniprot ID   -
Organism   Aliarcobacter cryaerophilus strain G13RTA     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 781629..793470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3B42_RS03950 - 782623..783042 (+) 420 WP_164469334.1 cyclophilin-like fold protein -
  C3B42_RS03955 - 783052..784269 (+) 1218 WP_228277316.1 MFS transporter -
  C3B42_RS03960 - 784443..785570 (+) 1128 WP_164469335.1 iron-containing alcohol dehydrogenase -
  C3B42_RS03965 - 785605..786636 (-) 1032 WP_164469336.1 alanine racemase -
  C3B42_RS03970 uvrC 786629..788470 (-) 1842 WP_164469337.1 excinuclease ABC subunit UvrC Machinery gene
  C3B42_RS03975 - 788592..791045 (+) 2454 WP_164469338.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71339.60 Da        Isoelectric Point: 9.2559

>NTDB_id=271277 C3B42_RS03970 WP_164469337.1 786629..788470(-) (uvrC) [Aliarcobacter cryaerophilus strain G13RTA]
MNLEEKLKELPNDSGVYQYFDENGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMISETTFVEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIYVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
IKGKSACLFYQIGKCKAPCEQKITKEEYKKLLDEALSYIYNKSKLLSKLKEKMKIYSDDFRFEDALNLRDRVKTIEKSEI
KTGIDLTTNEDLDIFAIKSASKKAVIVRMFIRDGKLASSNYDFIKINDDLEFDLNEAYKRAIVNYYSNELPIIPKEIIVA
DEILDLDDIEEFLYKRFNKKIKVINPKIDKKASIVKIALNNCDELLRIEASKNQTTIYEELKELFCLKTTPSLIESFDNS
HLMGQATVGAMIVWNENLGSFDKKAFRHYNLESKDEYSQMREMLIRRVESFSKNPAPDLWIIDGGETLLKLAFDIVQSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFRKNGEYKSLNLLTSDKRLQFIQRQRDEAHRFAISFHKKQKRKEDKEISFL
QINGIGEAKIKKLLLYFGEFEKIKSASLEELKAVLNEVDSKNIFDYFRKEENG

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=271277 C3B42_RS03970 WP_164469337.1 786629..788470(-) (uvrC) [Aliarcobacter cryaerophilus strain G13RTA]
ATGAATTTAGAAGAGAAATTAAAAGAGTTACCAAATGATTCTGGTGTTTATCAATATTTTGATGAAAACGGTCATTTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTAAAATCTTATTTTAAATTTACACCAAAACTACTACCTGCTGATA
AACTAAGTCCACGAATATATAAAATGATTAGTGAAACTACTTTTGTAGAGTGGATTGTTGTTCCAAATGAACATGATGCT
TTAATACTTGAAAACTCTTTAATCAAACAGTTAAAACCAAAATACAATGTACTTTTAAGAGATGATAAAACATATCCATA
TATTTATGTTGATTTAAATGAAGATTTTCCAAGACTTGAAATTACAAGAAAAATAGAAAAAGGTAAAAATATAAAATATT
TTGGTCCCTACTCAAGTGGAGCAAAAGATATGTTAGATAGCATATATGAAATAGTTCCTTTGGTGCAAAAAAAATCTTGT
ATAAAAGGAAAAAGTGCTTGTCTATTTTATCAAATAGGAAAATGTAAAGCTCCTTGTGAACAAAAAATAACAAAAGAAGA
GTATAAAAAACTTTTAGATGAAGCTTTAAGCTATATATACAATAAATCAAAACTTTTATCAAAACTAAAAGAGAAGATGA
AAATATATTCAGATGATTTTCGTTTTGAAGATGCTTTAAATTTAAGAGATAGAGTAAAAACTATTGAAAAATCTGAAATT
AAAACAGGAATAGATTTAACAACAAATGAAGATTTGGATATATTTGCCATAAAATCTGCTAGTAAAAAAGCTGTAATTGT
AAGAATGTTTATAAGAGATGGAAAACTTGCATCTTCAAATTATGATTTTATAAAAATAAATGATGATTTAGAGTTTGATT
TAAATGAAGCATATAAAAGAGCAATTGTAAACTACTACTCAAATGAACTTCCAATTATCCCAAAAGAGATTATTGTAGCT
GATGAAATTTTGGATTTAGATGACATTGAAGAGTTTTTATATAAAAGATTTAATAAAAAAATAAAAGTAATAAATCCAAA
AATAGATAAAAAAGCTAGTATTGTAAAAATTGCATTAAACAACTGTGATGAACTTCTAAGGATTGAAGCTTCAAAAAATC
AAACAACTATATATGAAGAGTTAAAAGAACTATTTTGCCTAAAAACAACTCCTAGTTTAATAGAAAGTTTTGATAACTCA
CATTTGATGGGACAAGCAACAGTTGGAGCTATGATTGTTTGGAATGAAAATTTAGGTTCTTTTGACAAAAAAGCTTTTAG
ACACTATAACCTTGAATCAAAAGATGAATATTCACAAATGAGAGAGATGTTAATAAGAAGAGTTGAGAGCTTTTCAAAAA
ATCCTGCTCCTGATTTATGGATTATTGATGGTGGAGAAACTTTGCTAAAACTGGCATTTGATATTGTACAAAGTATTGGG
GTAAATTTAGATATTATTGCTATTTCAAAACAAAAAGTAGATGCCAAAGCATATAGAGCAAAAGGAAATGCGAAAGATAT
AGTCCATTTTAGGAAAAATGGTGAATACAAAAGCTTAAATCTTCTTACAAGTGATAAAAGATTACAGTTTATTCAAAGAC
AAAGAGATGAAGCACATAGATTTGCTATTAGTTTTCATAAAAAACAAAAAAGAAAAGAGGATAAAGAGATATCCTTTTTA
CAAATAAATGGAATAGGTGAAGCTAAAATCAAAAAACTTCTTCTATATTTTGGAGAGTTTGAAAAGATAAAAAGCGCAAG
TTTAGAAGAGCTAAAAGCTGTTTTAAATGAAGTTGATTCAAAAAATATATTTGATTATTTTAGAAAGGAAGAGAATGGCT
AG

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(204-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-543)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.51

97.227

0.501

Multiple sequence alignment