Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECHS_RS02715 Genome accession   NC_009800
Coordinates   560470..561075 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli HS     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 555470..566075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECHS_RS26155 (EcHS_A0542) - 556024..556122 (+) 99 Protein_518 hypothetical protein -
  ECHS_RS02685 (EcHS_A0543) rsmS 556175..556336 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  ECHS_RS02690 (EcHS_A0544) priC 556350..556877 (-) 528 WP_000844876.1 primosomal replication protein N'' -
  ECHS_RS02695 (EcHS_A0545) ybaN 556947..557324 (+) 378 WP_001188905.1 DUF454 family protein -
  ECHS_RS02700 (EcHS_A0546) apt 557477..558028 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ECHS_RS02705 (EcHS_A0547) dnaX 558157..560088 (+) 1932 WP_000122010.1 DNA polymerase III subunit gamma/tau -
  ECHS_RS02710 (EcHS_A0548) ybaB 560141..560470 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ECHS_RS02715 (EcHS_A0549) recR 560470..561075 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECHS_RS02720 (EcHS_A0550) htpG 561185..563059 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  ECHS_RS02725 (EcHS_A0551) adk 563240..563884 (+) 645 WP_001220233.1 adenylate kinase -
  ECHS_RS02730 (EcHS_A0552) hemH 564120..565082 (+) 963 WP_001250117.1 ferrochelatase -
  ECHS_RS02735 (EcHS_A0553) aes 565079..566038 (-) 960 WP_000801865.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=27127 ECHS_RS02715 WP_001195025.1 560470..561075(+) (recR) [Escherichia coli HS]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=27127 ECHS_RS02715 WP_001195025.1 560470..561075(+) (recR) [Escherichia coli HS]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment