Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   D0819_RS04845 Genome accession   NZ_CP031784
Coordinates   965034..965651 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis strain HMNig-2     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 960034..970651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS04820 (D0819_04825) yndJ 960350..961990 (+) 1641 WP_153256774.1 YndJ family protein -
  D0819_RS04825 (D0819_04830) - 962080..962394 (+) 315 WP_031314944.1 membrane protein -
  D0819_RS04830 (D0819_04835) pghL 962618..963376 (+) 759 WP_021479204.1 gamma-polyglutamate hydrolase PghL -
  D0819_RS04835 (D0819_04840) - 963403..963852 (-) 450 WP_003245454.1 YndM family protein -
  D0819_RS04840 (D0819_04845) fosM 964061..964495 (+) 435 WP_032725818.1 FosM family fosfomycin resistance protein -
  D0819_RS21650 - 964404..964681 (+) 278 Protein_955 hypothetical protein -
  D0819_RS04845 (D0819_04855) dinR/lexA 965034..965651 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  D0819_RS04850 (D0819_04860) yneA 965801..966118 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  D0819_RS04855 (D0819_04865) dinL 966137..966790 (+) 654 WP_003231596.1 recombinase family protein -
  D0819_RS04860 (D0819_04870) ynzC 966854..967087 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  D0819_RS04865 (D0819_04875) recP/tkt 967256..969259 (+) 2004 WP_003231593.1 transketolase Machinery gene
  D0819_RS04870 (D0819_04880) sirA 969412..969858 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  D0819_RS04875 (D0819_04885) yneF 969944..970162 (+) 219 WP_003221221.1 YneF family protein -
  D0819_RS04880 (D0819_04890) ynzD 970236..970409 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=271247 D0819_RS04845 WP_003238209.1 965034..965651(-) (dinR/lexA) [Bacillus subtilis strain HMNig-2]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=271247 D0819_RS04845 WP_003238209.1 965034..965651(-) (dinR/lexA) [Bacillus subtilis strain HMNig-2]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGGGATCCGACAAAACCAAGAGCAATAGAAATTCTCGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCAGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACTGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCTGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACACACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATAGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1