Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   D0819_RS04395 Genome accession   NZ_CP031784
Coordinates   822293..822724 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain HMNig-2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 817293..827724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS04375 (D0819_04385) spoVS 817855..818115 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  D0819_RS04380 (D0819_04390) tdh 818380..819423 (+) 1044 WP_128441634.1 L-threonine 3-dehydrogenase -
  D0819_RS04385 (D0819_04395) kbl 819436..820614 (+) 1179 WP_021479272.1 glycine C-acetyltransferase -
  D0819_RS04390 (D0819_04400) miaB 820762..822291 (+) 1530 WP_153256755.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  D0819_RS04395 (D0819_04405) ymcA 822293..822724 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  D0819_RS04400 (D0819_04410) cotE 822986..823531 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  D0819_RS04405 (D0819_04415) hexA 823664..826240 (+) 2577 WP_153256756.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=271244 D0819_RS04395 WP_003231834.1 822293..822724(+) (ymcA) [Bacillus subtilis strain HMNig-2]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=271244 D0819_RS04395 WP_003231834.1 822293..822724(+) (ymcA) [Bacillus subtilis strain HMNig-2]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGTTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1