Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C3766_RS05150 Genome accession   NZ_CP026649
Coordinates   1085221..1087035 (+) Length   604 a.a.
NCBI ID   WP_104851315.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain R11     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080221..1092035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3766_RS05125 (C3766_05125) - 1081042..1081983 (+) 942 WP_013858788.1 ABC transporter ATP-binding protein -
  C3766_RS05130 (C3766_05130) spxA 1082263..1082658 (+) 396 WP_013858789.1 transcriptional regulator SpxA -
  C3766_RS05140 (C3766_05140) mecA 1083018..1083677 (+) 660 WP_026683767.1 adaptor protein MecA -
  C3766_RS05145 (C3766_05145) - 1083927..1085153 (+) 1227 WP_260832499.1 competence protein CoiA -
  C3766_RS05150 (C3766_05150) pepF 1085221..1087035 (+) 1815 WP_104851315.1 oligoendopeptidase F Regulator
  C3766_RS05155 (C3766_05155) - 1087310..1087498 (-) 189 WP_104851316.1 hypothetical protein -
  C3766_RS05165 (C3766_05165) - 1087960..1088817 (-) 858 WP_014095723.1 ClpXP adapter SpxH family protein -
  C3766_RS05170 (C3766_05170) - 1088814..1089215 (-) 402 WP_014095722.1 globin -
  C3766_RS05180 (C3766_05180) - 1090193..1091368 (+) 1176 WP_017551449.1 IS256 family transposase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69489.03 Da        Isoelectric Point: 5.1940

>NTDB_id=271235 C3766_RS05150 WP_104851315.1 1085221..1087035(+) (pepF) [Heyndrickxia coagulans strain R11]
MENGKKVHALPSRDEVREALTWRLEDIFPSDDDWNKEYQAVKEKLADAASYQGKLGESAEQLYHALKFQDEVTERFGKLY
TYAHMRYDQDTTNAFYQGIDSKAKSLAAQVGSAFAFVVPEILSIEEAKLNQFLEAYEPLQLYRHALEEINEMRPHILSKE
EEALLAQVSEVLNTSSTTFGMLNNADLEFSTVIDENGNEVQITHGRFTRLLESKDRRVRKEAFQKLYATYKKFTNTFAST
LSGQVKKNNVVAQIRHYHSAREAALSANHIPEKVYDQLVETVNKHLGLLHRYVALRKKALQLDEVHMYDLYTPLVQDADM
EVTYEKAKEIVLDGLHPLGEEYRSILQQAFENRWIDVVENKGKRSGAYSSGAYGTNPYILLNWQDNIDNVFTLAHELGHS
VHSYYTRKNQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIKDEKQRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
HGEALTAELLTDEYYKLNQKYYGTDTAIDQEIGLEWARIPHFYYDYYVYQYATGFSAATALSKQILEEGEPAVKRYIGYL
SAGSSEYPIEVLKKAGVDMTSPQPVEDALKVFEEKLTEMENLLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=271235 C3766_RS05150 WP_104851315.1 1085221..1087035(+) (pepF) [Heyndrickxia coagulans strain R11]
ATGGAAAATGGGAAAAAAGTACACGCGTTGCCAAGCCGGGACGAGGTTCGTGAAGCATTAACCTGGAGGCTTGAGGATAT
TTTTCCAAGCGACGATGACTGGAATAAAGAATACCAAGCAGTAAAAGAAAAGCTGGCCGATGCCGCTTCTTATCAGGGGA
AACTTGGCGAAAGCGCGGAACAGCTTTATCATGCGCTAAAGTTCCAGGATGAAGTGACAGAAAGGTTCGGCAAGCTGTAT
ACATACGCGCATATGCGTTATGACCAGGACACAACGAATGCCTTTTACCAGGGGATAGACAGCAAAGCAAAAAGCCTTGC
TGCCCAGGTTGGGAGCGCGTTTGCGTTTGTGGTGCCGGAAATTCTTTCGATTGAAGAAGCGAAACTGAACCAATTCCTGG
AAGCTTATGAGCCGCTGCAATTGTACCGGCACGCATTGGAAGAAATCAATGAGATGCGCCCGCATATTTTATCGAAGGAA
GAAGAAGCATTGCTCGCACAGGTTTCAGAAGTGCTGAATACTTCCAGCACCACTTTCGGCATGCTGAACAATGCCGACCT
TGAGTTCTCGACCGTGATCGATGAAAACGGCAATGAAGTGCAGATCACGCACGGCCGTTTTACACGCCTGCTGGAAAGCA
AAGACCGCCGCGTGCGCAAAGAGGCATTCCAGAAATTGTATGCAACCTACAAAAAATTCACCAACACGTTTGCGAGCACG
CTCAGCGGCCAGGTGAAAAAGAACAATGTTGTTGCGCAAATCCGCCATTACCATTCGGCGCGTGAAGCTGCCCTTTCGGC
AAACCACATTCCTGAAAAAGTGTACGACCAGCTTGTGGAAACGGTGAACAAGCATCTTGGTTTGCTGCATCGGTATGTTG
CACTGCGCAAAAAAGCGCTGCAGCTTGATGAAGTGCATATGTATGATTTGTATACGCCGCTTGTCCAGGACGCCGATATG
GAAGTAACATATGAAAAAGCGAAAGAGATTGTGCTTGACGGCCTCCATCCGCTCGGCGAGGAATACCGGAGCATTTTGCA
ACAGGCGTTTGAAAACCGCTGGATTGATGTGGTGGAAAATAAGGGAAAACGGAGCGGGGCCTATTCTTCGGGCGCTTACG
GGACCAATCCGTACATTTTGCTGAACTGGCAGGACAATATTGACAATGTGTTCACCCTCGCGCATGAGCTCGGCCACAGC
GTCCACAGCTATTACACGCGGAAGAACCAGCCGTATCCGTACGGGGATTATTCTATTTTTGTGGCGGAAGTGGCTTCCAC
GTGCAATGAGGCACTATTGAATGACTATCTGTTAAAAACGATCAAAGACGAGAAACAGCGGATTTATTTATTGAATCATT
ATCTGGAAGGTTTCCGCGGGACGGTTTTCCGCCAGACGATGTTTGCTGAATTTGAGCATCTGATCCATCAAAAAGCGCAA
CATGGCGAAGCGTTGACGGCGGAACTTTTAACAGATGAGTATTATAAGCTGAACCAAAAATACTATGGTACGGATACCGC
CATTGATCAGGAAATCGGGCTAGAGTGGGCACGCATTCCGCATTTTTATTACGATTATTATGTATATCAGTATGCGACCG
GCTTCAGCGCCGCGACCGCGTTAAGCAAACAAATCCTCGAAGAAGGGGAACCGGCTGTCAAACGCTATATCGGCTATTTG
AGCGCCGGCAGCTCGGAATATCCGATTGAAGTATTGAAAAAAGCAGGCGTCGATATGACGTCACCCCAACCGGTCGAAGA
TGCGTTAAAAGTTTTTGAAGAAAAATTAACGGAAATGGAAAACTTGCTCGGATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.845

98.013

0.498

Multiple sequence alignment