Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D0819_RS02025 Genome accession   NZ_CP031784
Coordinates   365185..366321 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 360185..371321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS02005 (D0819_02015) uxaA 360635..362128 (+) 1494 WP_153256698.1 altronate dehydratase family protein -
  D0819_RS02010 (D0819_02020) yjnA 362167..362931 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  D0819_RS02015 (D0819_02025) bstD 363156..363620 (-) 465 WP_014479541.1 DinB family protein -
  D0819_RS02020 (D0819_02030) yjoB 363769..365040 (+) 1272 WP_003245490.1 ATPase YjoB -
  D0819_RS02025 (D0819_02035) rapC 365185..366321 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  D0819_RS02030 (D0819_02040) phrA 366311..366445 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  D0819_RS02035 (D0819_02045) yjpA 366476..366733 (-) 258 WP_003232731.1 YciI family protein -
  D0819_RS02040 (D0819_02050) xlyB 366854..367807 (+) 954 WP_153256699.1 N-acetylmuramoyl-L-alanine amidase -
  D0819_RS02045 (D0819_02055) yjqA 367847..368224 (-) 378 WP_043857326.1 PH domain-containing protein -
  D0819_RS02050 (D0819_02060) pghB 368329..368931 (+) 603 WP_153256700.1 poly-gamma-glutamate hydrolase family protein -
  D0819_RS02055 (D0819_02065) xpdC 369008..369844 (+) 837 WP_003245071.1 manganese catalase family protein -
  D0819_RS02060 (D0819_02070) xkdA 369888..370484 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  D0819_RS02065 (D0819_02075) xre 370647..370988 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=271223 D0819_RS02025 WP_015252291.1 365185..366321(+) (rapC) [Bacillus subtilis strain HMNig-2]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=271223 D0819_RS02025 WP_015252291.1 365185..366321(+) (rapC) [Bacillus subtilis strain HMNig-2]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418