Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C3766_RS00560 Genome accession   NZ_CP026649
Coordinates   107531..108901 (+) Length   456 a.a.
NCBI ID   WP_104851065.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain R11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 102531..113901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3766_RS00540 (C3766_00540) - 102831..103292 (+) 462 WP_013858048.1 CtsR family transcriptional regulator -
  C3766_RS00545 (C3766_00545) - 103312..103857 (+) 546 WP_017551242.1 UvrB/UvrC motif-containing protein -
  C3766_RS00550 (C3766_00550) - 103857..104924 (+) 1068 WP_104851064.1 protein arginine kinase -
  C3766_RS00555 (C3766_00555) clpC 104941..107391 (+) 2451 WP_013858051.1 ATP-dependent protease ATP-binding subunit ClpC -
  C3766_RS00560 (C3766_00560) radA 107531..108901 (+) 1371 WP_104851065.1 DNA repair protein RadA Machinery gene
  C3766_RS00565 (C3766_00565) - 109231..110316 (+) 1086 WP_104851066.1 PIN/TRAM domain-containing protein -
  C3766_RS00570 (C3766_00570) ispD 110382..111062 (+) 681 WP_104851067.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  C3766_RS00575 (C3766_00575) ispF 111065..111541 (+) 477 WP_014096523.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  C3766_RS00585 (C3766_00585) gltX 112094..113554 (+) 1461 WP_061086775.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49805.29 Da        Isoelectric Point: 7.7258

>NTDB_id=271222 C3766_RS00560 WP_104851065.1 107531..108901(+) (radA) [Heyndrickxia coagulans strain R11]
MAKRTVKFVCQNCGYESPKWMGKCPQCNQWNQMVEEAEAPKRRGFFLHPEPGNETKAAPITSIESKEEKRTKVDFGELNR
VLGGGIVAGSLVLIGGDPGIGKSTLLLQVSSQLAKHGLNVLYISGEESAKQTKLRADRLNIHTDQLYVLPETDLSVIQQA
IDELNPGFVIIDSIQTIYHPEIQSAPGSVSQVRETTAQLMRTAKTKNVAIFIVGHVTKEGSIAGPRVLEHMVDTVLYFEG
ERHNAYRILRAVKNRFGSTNEIAILEMKESGLEEVQNPSEIFLEERTKGAAGSTVVASIEGTRPVLVEIQALLAPTFFNM
PRRMASGIDYNRVTLIMAVLEKRAGLLIQNQDAYLKVAGGLKVDEPAVDLAVAVSVASSFRDKPTNADDCIIGEVGLTGE
VRRVSRIEQRVQEAAKLGFRRAIIPKNNMGGWTPPKEIQVIGVATIQEALKAALGG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=271222 C3766_RS00560 WP_104851065.1 107531..108901(+) (radA) [Heyndrickxia coagulans strain R11]
ATGGCAAAAAGAACCGTGAAGTTTGTTTGCCAGAACTGCGGCTACGAGTCGCCAAAATGGATGGGAAAGTGCCCGCAATG
CAACCAGTGGAACCAGATGGTGGAGGAAGCGGAGGCGCCAAAAAGGAGGGGCTTTTTTTTACATCCTGAGCCCGGAAATG
AAACCAAAGCGGCGCCTATTACGTCTATAGAGTCTAAAGAAGAAAAAAGGACGAAAGTGGATTTTGGCGAGCTGAATCGT
GTCCTCGGAGGCGGCATTGTTGCCGGGTCACTTGTTTTGATCGGCGGGGATCCCGGGATCGGCAAATCAACCCTGCTTTT
GCAAGTGTCATCACAACTGGCAAAGCACGGGTTAAATGTACTGTATATCTCCGGGGAGGAATCTGCGAAACAGACGAAAT
TAAGGGCAGACCGGTTAAACATCCATACCGACCAACTTTATGTGCTGCCGGAAACGGACCTTTCCGTGATCCAGCAGGCG
ATAGATGAACTGAACCCCGGCTTTGTTATCATTGATTCCATCCAGACGATTTACCATCCGGAAATCCAGTCTGCGCCGGG
CAGTGTGTCGCAAGTGAGGGAAACGACTGCACAGCTGATGCGGACGGCAAAAACAAAAAATGTGGCCATCTTCATTGTCG
GCCACGTGACAAAAGAAGGCTCCATTGCCGGCCCGCGCGTGCTTGAACATATGGTGGATACGGTCCTGTATTTTGAAGGT
GAACGCCATAATGCCTACCGGATATTAAGGGCGGTCAAAAACCGCTTTGGCTCGACCAATGAAATTGCGATTTTGGAAAT
GAAAGAATCCGGTTTGGAAGAAGTCCAGAACCCTTCCGAAATTTTTCTGGAAGAACGGACAAAAGGTGCAGCCGGTTCTA
CCGTGGTTGCTTCCATTGAGGGGACGCGCCCGGTGCTTGTCGAGATCCAGGCGCTTTTGGCTCCGACGTTTTTCAATATG
CCGCGGCGGATGGCATCCGGGATTGATTATAACCGTGTCACGCTGATTATGGCGGTGCTTGAAAAACGGGCCGGCCTTTT
GATTCAGAACCAGGATGCATATTTAAAAGTTGCCGGCGGCCTGAAAGTGGATGAACCGGCAGTGGATTTGGCAGTTGCCG
TCAGCGTGGCATCCAGTTTCCGCGACAAGCCGACAAATGCGGATGACTGCATTATCGGAGAAGTCGGGCTGACGGGGGAA
GTCAGGCGGGTGTCCCGCATTGAGCAGCGCGTCCAGGAAGCGGCAAAGCTCGGTTTCCGGCGGGCGATCATTCCGAAAAA
TAATATGGGTGGGTGGACGCCGCCAAAGGAGATTCAAGTGATCGGCGTCGCTACCATCCAGGAAGCTTTAAAAGCGGCAC
TCGGAGGATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-220)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.242

100

0.717
  radA Streptococcus mitis NCTC 12261

63.193

98.904

0.625
  radA Streptococcus mitis SK321

62.971

98.904

0.623
  radA Streptococcus pneumoniae Rx1

62.971

98.904

0.623
  radA Streptococcus pneumoniae D39

62.971

98.904

0.623
  radA Streptococcus pneumoniae R6

62.971

98.904

0.623
  radA Streptococcus pneumoniae TIGR4

62.971

98.904

0.623

Multiple sequence alignment