Detailed information
Bioinformatically predicted
Overview
| Name | luxS | Type | Regulator |
| Locus tag | C4E16_RS13920 | Genome accession | NZ_CP026647 |
| Coordinates | 2986486..2987004 (+) | Length | 172 a.a. |
| NCBI ID | WP_001130227.1 | Uniprot ID | - |
| Organism | Vibrio cholerae O1 biovar El Tor strain HC1037 | ||
| Function | induction of competence (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2981486..2992004
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4E16_RS13910 (C4E16_13910) | - | 2981896..2984751 (+) | 2856 | WP_001233047.1 | pitrilysin family protein | - |
| C4E16_RS13915 (C4E16_13915) | gshA | 2984863..2986437 (+) | 1575 | WP_000032608.1 | glutamate--cysteine ligase | - |
| C4E16_RS13920 (C4E16_13920) | luxS | 2986486..2987004 (+) | 519 | WP_001130227.1 | S-ribosylhomocysteine lyase | Regulator |
| C4E16_RS13925 (C4E16_13925) | - | 2987074..2988354 (-) | 1281 | WP_000340990.1 | HlyC/CorC family transporter | - |
| C4E16_RS13930 (C4E16_13930) | - | 2988437..2989231 (-) | 795 | WP_000369278.1 | inner membrane protein YpjD | - |
| C4E16_RS13935 (C4E16_13935) | ffh | 2989444..2990829 (+) | 1386 | WP_000462720.1 | signal recognition particle protein | - |
| C4E16_RS13940 (C4E16_13940) | rpsP | 2991065..2991313 (+) | 249 | WP_000256449.1 | 30S ribosomal protein S16 | - |
| C4E16_RS13945 (C4E16_13945) | rimM | 2991341..2991895 (+) | 555 | WP_000061906.1 | ribosome maturation factor RimM | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19080.90 Da Isoelectric Point: 5.2199
>NTDB_id=271209 C4E16_RS13920 WP_001130227.1 2986486..2987004(+) (luxS) [Vibrio cholerae O1 biovar El Tor strain HC1037]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH
Nucleotide
Download Length: 519 bp
>NTDB_id=271209 C4E16_RS13920 WP_001130227.1 2986486..2987004(+) (luxS) [Vibrio cholerae O1 biovar El Tor strain HC1037]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| luxS | Vibrio cholerae strain A1552 |
100 |
100 |
1 |