Detailed information NTG0271206

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C4E16_RS13780
• Genome accession: NZ_CP026647
• Coordinates: 2959511..2960518 (+)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae O1 biovar El Tor strain HC1037
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2954511..2965518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4E16_RS13745 (C4E16_13745)	ftsB	2954562..2954846 (+)	285	WP_001263189.1	cell division protein FtsB	-
C4E16_RS13750 (C4E16_13750)	ispD	2954843..2955541 (+)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C4E16_RS13755 (C4E16_13755)	ispF	2955538..2956014 (+)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C4E16_RS13760 (C4E16_13760)	truD	2956044..2957129 (+)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
C4E16_RS13765 (C4E16_13765)	surE	2957131..2957883 (+)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
C4E16_RS13770 (C4E16_13770)	-	2957876..2958502 (+)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
C4E16_RS13775 (C4E16_13775)	nlpD	2958502..2959437 (+)	936	WP_000177568.1	murein hydrolase activator NlpD	-
C4E16_RS13780 (C4E16_13780)	rpoS	2959511..2960518 (+)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
C4E16_RS13785 (C4E16_13785)	mutS	2960611..2963199 (-)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
C4E16_RS13790 (C4E16_13790)	cysM	2963467..2964354 (-)	888	WP_001279365.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=271206 C4E16_RS13780 WP_000116737.1 2959511..2960518(+) (rpoS) [Vibrio cholerae O1 biovar El Tor strain HC1037]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=271206 C4E16_RS13780 WP_000116737.1 2959511..2960518(+) (rpoS) [Vibrio cholerae O1 biovar El Tor strain HC1037]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1