Detailed information NTG0271194

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: C4E16_RS10530
• Genome accession: NZ_CP026647
• Coordinates: 2297945..2298952 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae O1 biovar El Tor strain HC1037
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2292945..2303952

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4E16_RS10505 (C4E16_10505)	rraA	2293520..2294035 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
C4E16_RS10510 (C4E16_10510)	-	2294110..2295027 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
C4E16_RS10515 (C4E16_10515)	hslU	2295131..2296462 (-)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
C4E16_RS10520 (C4E16_10520)	hslV	2296528..2297085 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
C4E16_RS10525 (C4E16_10525)	-	2297222..2297773 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
C4E16_RS10530 (C4E16_10530)	cytR	2297945..2298952 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
C4E16_RS10535 (C4E16_10535)	priA	2299258..2301462 (-)	2205	WP_001247858.1	primosomal protein N'	-
C4E16_RS10540 (C4E16_10540)	rpmE	2301717..2301935 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
C4E16_RS10545 (C4E16_10545)	-	2302243..2303520 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
C4E16_RS10550 (C4E16_10550)	metJ	2303631..2303948 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=271194 C4E16_RS10530 WP_000224452.1 2297945..2298952(-) (cytR) [Vibrio cholerae O1 biovar El Tor strain HC1037]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=271194 C4E16_RS10530 WP_000224452.1 2297945..2298952(-) (cytR) [Vibrio cholerae O1 biovar El Tor strain HC1037]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904