Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D0808_RS06415 Genome accession   NZ_CP031783
Coordinates   1252196..1253326 (+) Length   376 a.a.
NCBI ID   WP_153255772.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1247196..1258326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS06390 (D0808_06460) - 1247444..1248145 (+) 702 WP_024572640.1 hypothetical protein -
  D0808_RS06395 (D0808_06465) - 1248251..1249294 (-) 1044 Protein_1212 T7SS effector LXG polymorphic toxin -
  D0808_RS06400 (D0808_06470) - 1249460..1249798 (+) 339 WP_024571793.1 hypothetical protein -
  D0808_RS06405 (D0808_06475) - 1249811..1250731 (+) 921 WP_024571794.1 DUF5655 domain-containing protein -
  D0808_RS06410 (D0808_06480) - 1250888..1252048 (+) 1161 WP_024571795.1 lysozyme inhibitor LprI family protein -
  D0808_RS06415 (D0808_06485) rapC 1252196..1253326 (+) 1131 WP_153255772.1 response regulator aspartate phosphatase RapH Regulator
  D0808_RS06420 (D0808_06490) phrH 1253316..1253489 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  D0808_RS06425 (D0808_06495) yeeI 1253649..1254368 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  D0808_RS06430 (D0808_06500) - 1254502..1254927 (+) 426 WP_153255773.1 spore coat protein -
  D0808_RS06435 (D0808_06505) yezE 1255042..1255626 (+) 585 WP_015715467.1 TetR/AcrR family transcriptional regulator -
  D0808_RS06440 (D0808_06510) yesE 1255705..1256151 (+) 447 WP_153255774.1 nuclear transport factor 2 family protein -
  D0808_RS06445 (D0808_06515) yesF 1256148..1257013 (+) 866 Protein_1222 NmrA family NAD(P)-binding protein -
  D0808_RS06450 (D0808_06520) cotJA 1257140..1257388 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  D0808_RS06455 (D0808_06525) cotJB 1257372..1257635 (+) 264 WP_003219491.1 spore coat protein CotJB -
  D0808_RS06460 (D0808_06530) cotJC 1257650..1258219 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43906.20 Da        Isoelectric Point: 5.7360

>NTDB_id=271095 D0808_RS06415 WP_153255772.1 1252196..1253326(+) (rapC) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPVVSDDIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQKNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALDLAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=271095 D0808_RS06415 WP_153255772.1 1252196..1253326(+) (rapC) [Bacillus subtilis strain MENO2 voucher National Research Centre]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAAATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGGTTGTGTCAG
ATGATATTGAGAAAGCCGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTGGACATTTATCAAAAAAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTTAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTAGATTTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_7)

(222-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.426

100

0.404
  rapF Bacillus subtilis subsp. subtilis str. 168

39.523

100

0.396

Multiple sequence alignment