Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   D0808_RS05105 Genome accession   NZ_CP031783
Coordinates   1003353..1003787 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 998353..1008787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS05075 (D0808_05125) ydaD 999000..999860 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  D0808_RS05080 (D0808_05130) lyxE 999876..1000379 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  D0808_RS05085 (D0808_05135) ydaF 1000467..1001018 (+) 552 WP_153255685.1 GNAT family protein -
  D0808_RS05090 (D0808_05140) ydaG 1001096..1001518 (+) 423 WP_153255686.1 pyridoxamine 5'-phosphate oxidase family protein -
  D0808_RS05095 (D0808_05145) amj 1002024..1002833 (+) 810 WP_015715258.1 lipid II flippase Amj -
  D0808_RS05100 (D0808_05150) ydzA 1002878..1003168 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  D0808_RS05105 (D0808_05155) lrpC 1003353..1003787 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  D0808_RS05110 (D0808_05160) topB 1003852..1006035 (+) 2184 WP_101169825.1 DNA topoisomerase III -
  D0808_RS05115 (D0808_05165) ephJ 1006236..1007324 (+) 1089 WP_029317314.1 hypothetical protein -
  D0808_RS05120 (D0808_05170) epsK 1007305..1008156 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=271091 D0808_RS05105 WP_003246585.1 1003353..1003787(+) (lrpC) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=271091 D0808_RS05105 WP_003246585.1 1003353..1003787(+) (lrpC) [Bacillus subtilis strain MENO2 voucher National Research Centre]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCATACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1