Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PING_RS03290 Genome accession   NC_008709
Coordinates   804482..805381 (+) Length   299 a.a.
NCBI ID   WP_408635113.1    Uniprot ID   -
Organism   Psychromonas ingrahamii 37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 799482..810381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PING_RS03265 (Ping_0618) - 800455..802416 (+) 1962 WP_157035298.1 YdbH domain-containing protein -
  PING_RS03270 (Ping_0619) - 802416..802604 (+) 189 WP_011769031.1 YnbE family lipoprotein -
  PING_RS03275 (Ping_0620) - 802633..802947 (+) 315 WP_011769032.1 YdbL family protein -
  PING_RS03280 (Ping_0621) - 803009..803275 (-) 267 WP_011769033.1 DUF1145 domain-containing protein -
  PING_RS03285 (Ping_0622) rsmD 803272..803883 (-) 612 WP_011769034.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PING_RS21745 - 804252..804485 (+) 234 WP_408635117.1 hypothetical protein -
  PING_RS03290 (Ping_0623) pilA 804482..805381 (+) 900 WP_408635113.1 signal recognition particle-docking protein FtsY Machinery gene
  PING_RS03295 (Ping_0624) ftsE 805396..806064 (+) 669 WP_011769036.1 cell division ATP-binding protein FtsE -
  PING_RS03300 (Ping_0625) ftsX 806069..807055 (+) 987 WP_011769037.1 permease-like cell division protein FtsX -
  PING_RS03305 (Ping_0626) rpoH 807225..808076 (+) 852 WP_011769038.1 RNA polymerase sigma factor RpoH -
  PING_RS03310 (Ping_0627) - 808190..809020 (+) 831 WP_011769039.1 prephenate dehydratase domain-containing protein -
  PING_RS03315 (Ping_0628) trmA 809053..810150 (-) 1098 WP_011769040.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32606.42 Da        Isoelectric Point: 4.8068

>NTDB_id=27108 PING_RS03290 WP_408635113.1 804482..805381(+) (pilA) [Psychromonas ingrahamii 37]
MTKTRLSIGSGLYSLFSGKKIDADLFEELEEQLILADIGVDTTLKIIDKLTAQANRKQLKDAEALYTLLKEDLSGILQEV
EQPLVIDETKSPYVILMVGVNGVGKTTTIGKLAKKYQQQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQQTGSDSA
SVLFDAMDAAKARGIDVLIADTAGRLQNKEHLMDELSKVVRIMRKKDPSAPHEIMLTIDASTGQNAISQADLFNKAVGIT
GITLTKLDGTAKGGVIFSIADKYKLPIRYIGTGEGIDDLREFNAREFIDALFSKEEEIE

Nucleotide


Download         Length: 900 bp        

>NTDB_id=27108 PING_RS03290 WP_408635113.1 804482..805381(+) (pilA) [Psychromonas ingrahamii 37]
TTGACCAAAACTCGTTTAAGTATCGGCAGTGGTTTATATTCTTTATTTAGCGGTAAAAAAATTGACGCGGATCTTTTTGA
AGAGTTGGAAGAGCAATTAATCCTTGCCGATATTGGTGTTGATACAACATTAAAAATTATCGACAAATTAACCGCACAAG
CGAATCGTAAACAACTTAAAGATGCAGAAGCATTATATACCCTATTAAAAGAGGATCTTTCCGGCATATTGCAAGAAGTT
GAACAGCCTTTAGTCATAGATGAAACTAAATCGCCCTACGTTATCTTGATGGTCGGTGTTAATGGGGTAGGTAAAACGAC
CACTATTGGTAAATTGGCTAAAAAATATCAACAACAGGGGAAATCGGTAATGTTAGCCGCAGGTGATACTTTTCGTGCTG
CCGCCGTTGAACAATTACAGGTCTGGGGAGAGCGAAACAATATTCCCGTTATTGCGCAGCAAACAGGATCCGATAGTGCA
TCGGTATTGTTTGATGCAATGGATGCGGCTAAAGCACGAGGTATTGATGTGTTAATCGCAGATACTGCCGGTCGTTTACA
AAATAAAGAGCATTTGATGGATGAGCTAAGCAAAGTGGTTCGTATTATGCGTAAAAAAGATCCCAGTGCACCCCATGAAA
TTATGCTAACCATTGATGCAAGTACTGGCCAAAATGCCATAAGCCAGGCCGATTTATTTAATAAAGCAGTCGGAATTACC
GGTATAACCTTAACCAAACTGGATGGCACAGCAAAAGGAGGGGTTATTTTTTCAATTGCTGATAAGTATAAACTGCCTAT
TCGTTATATTGGAACAGGCGAAGGAATTGATGACTTAAGAGAATTTAATGCCAGGGAGTTTATTGACGCCCTTTTTTCGA
AAGAAGAAGAGATTGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(9-73)

SRP54-type protein, GTPase domain (SRP54)

(93-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

54.452

97.659

0.532

Multiple sequence alignment