Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D0808_RS00365 Genome accession   NZ_CP031783
Coordinates   66142..67275 (-) Length   377 a.a.
NCBI ID   WP_015251020.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 61142..72275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS00325 (D0808_00320) ywnA 61271..61672 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  D0808_RS00330 (D0808_00325) ureC 61807..63516 (-) 1710 WP_124059322.1 urease subunit alpha -
  D0808_RS00335 (D0808_00330) ureB 63513..63887 (-) 375 WP_015251023.1 urease subunit beta -
  D0808_RS00340 (D0808_00335) ureA 63884..64201 (-) 318 WP_003227724.1 urease subunit gamma -
  D0808_RS20900 - 64396..64554 (-) 159 WP_124059325.1 hypothetical protein -
  D0808_RS21205 - 64656..64724 (-) 69 WP_144486809.1 hypothetical protein -
  D0808_RS21210 - 64870..65032 (-) 163 Protein_73 urea ABC transporter substrate-binding protein -
  D0808_RS00355 (D0808_00350) csbD 65246..65434 (-) 189 WP_003227718.1 stress response protein CsbD -
  D0808_RS00360 (D0808_00355) - 65507..65986 (-) 480 WP_003244390.1 hypothetical protein -
  D0808_RS00365 (D0808_00360) rapC 66142..67275 (-) 1134 WP_015251020.1 response regulator aspartate phosphatase RapB Regulator
  D0808_RS00370 (D0808_00370) moaA 67467..68492 (-) 1026 WP_153255440.1 GTP 3',8-cyclase MoaA -
  D0808_RS00375 (D0808_00375) fdhD 68508..69296 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  D0808_RS00380 (D0808_00380) - 69542..69703 (-) 162 WP_003227706.1 hypothetical protein -
  D0808_RS00385 (D0808_00385) ywmD 69798..70472 (-) 675 WP_003243553.1 VWA domain-containing protein -
  D0808_RS00390 - 70525..70665 (-) 141 WP_014478246.1 hypothetical protein -
  D0808_RS00395 (D0808_00395) ywmC 70796..71479 (-) 684 WP_024571497.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45038.16 Da        Isoelectric Point: 4.7546

>NTDB_id=271056 D0808_RS00365 WP_015251020.1 66142..67275(-) (rapC) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=271056 D0808_RS00365 WP_015251020.1 66142..67275(-) (rapC) [Bacillus subtilis strain MENO2 voucher National Research Centre]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGCTTGATCGGATCAGCTCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCAGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment