Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SGO_RS08590 Genome accession   NC_009785
Coordinates   1819867..1820325 (-) Length   152 a.a.
NCBI ID   WP_012130789.1    Uniprot ID   A8AZ12
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1814867..1825325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS08575 (SGO_1749) manA 1815253..1816197 (-) 945 WP_012130786.1 mannose-6-phosphate isomerase, class I -
  SGO_RS08580 (SGO_1750) rcrQ 1816361..1818118 (-) 1758 WP_012130787.1 ABC transporter ATP-binding protein Regulator
  SGO_RS08585 (SGO_1751) rcrP 1818108..1819874 (-) 1767 WP_012130788.1 ABC transporter ATP-binding protein Regulator
  SGO_RS08590 (SGO_1752) rcrR 1819867..1820325 (-) 459 WP_012130789.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SGO_RS08595 (SGO_1753) - 1820597..1821166 (-) 570 WP_012130790.1 hypothetical protein -
  SGO_RS08600 (SGO_1754) - 1821176..1821586 (-) 411 WP_012130791.1 peptide deformylase -
  SGO_RS08605 (SGO_1755) scrK 1821635..1822534 (-) 900 WP_012130792.1 fructokinase ScrK -
  SGO_RS08610 (SGO_1756) - 1822775..1823299 (-) 525 WP_012130793.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17556.33 Da        Isoelectric Point: 8.5458

>NTDB_id=27099 SGO_RS08590 WP_012130789.1 1819867..1820325(-) (rcrR) [Streptococcus gordonii str. Challis substr. CH1]
MEKPLLEFKRFGRKTQRIIEKRAKVCGMEFMGGPQGQVLHIVSHRAKRGLSTFIRDIEHELDISKSVASNLIKRMEKNGS
IFLEVSETDKRAKMIHLTAQSKQQLKELHDFFNEIDRCLLQGVSEEELATFTLVMAKFHQNIEKLESEDANV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=27099 SGO_RS08590 WP_012130789.1 1819867..1820325(-) (rcrR) [Streptococcus gordonii str. Challis substr. CH1]
TTGGAAAAGCCTTTATTAGAATTCAAACGCTTTGGCCGAAAGACTCAACGGATCATAGAGAAAAGAGCCAAGGTTTGTGG
GATGGAATTTATGGGAGGTCCACAAGGTCAAGTTCTTCACATCGTATCTCACCGAGCGAAAAGAGGACTTTCGACCTTTA
TTAGGGATATTGAGCATGAGTTAGATATTTCTAAGTCGGTGGCCAGTAATCTAATCAAACGGATGGAAAAAAATGGATCC
ATCTTTCTTGAGGTAAGCGAGACAGATAAAAGGGCCAAGATGATTCATTTAACAGCCCAGTCCAAACAACAATTAAAAGA
GTTACATGATTTTTTTAATGAAATTGATCGCTGTCTCCTCCAGGGTGTTTCAGAAGAAGAATTGGCAACCTTCACTCTGG
TTATGGCGAAATTCCACCAAAATATTGAGAAATTAGAAAGCGAGGATGCCAATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AZ12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

40.411

96.053

0.388

Multiple sequence alignment