Detailed information NTG0270969

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: D0853_RS00285
• Genome accession: NZ_CP031781
• Coordinates: 54754..56589 (+)
• Length: 611 a.a.
• NCBI ID: WP_005458577.1
• Uniprot ID: Q87KH0
• Organism: Vibrio parahaemolyticus strain VPD14
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 49754..61589

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0853_RS00265 (D0853_00270)	ggt	50172..51932 (-)	1761	WP_005480939.1	gamma-glutamyltransferase	-
D0853_RS00270 (D0853_00275)	-	52043..52702 (-)	660	WP_005458574.1	LysE family translocator	-
D0853_RS00275 (D0853_00280)	-	52794..53591 (-)	798	WP_005458575.1	AraC family transcriptional regulator	-
D0853_RS00280 (D0853_00285)	rarD	53665..54579 (-)	915	WP_005480950.1	EamA family transporter RarD	-
D0853_RS00285 (D0853_00290)	recQ	54754..56589 (+)	1836	WP_005458577.1	ATP-dependent DNA helicase RecQ	Machinery gene
D0853_RS00290 (D0853_00295)	-	56599..56904 (+)	306	WP_005458579.1	DUF3630 family protein	-
D0853_RS00300 (D0853_00305)	-	57198..57866 (+)	669	WP_005480953.1	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	-
D0853_RS00305 (D0853_00310)	gppA	58063..59556 (-)	1494	WP_005480964.1	guanosine-5'-triphosphate,3'-diphosphate diphosphatase	-
D0853_RS00310 (D0853_00315)	rhlB	59576..60889 (-)	1314	WP_005458582.1	ATP-dependent RNA helicase RhlB	-
D0853_RS00315 (D0853_00320)	trxA	61001..61327 (+)	327	WP_005458583.1	thioredoxin TrxA	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69227.13 Da
• Isoelectric Point: 6.8897

>NTDB_id=270969 D0853_RS00285 WP_005458577.1 54754..56589(+) (recQ) [Vibrio parahaemolyticus strain VPD14]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPISQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide

• Length: 1836 bp

>NTDB_id=270969 D0853_RS00285 WP_005458577.1 54754..56589(+) (recQ) [Vibrio parahaemolyticus strain VPD14]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCGGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCGACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGTTGGTTCGTAGTGGCATCACCTTGGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAGGCTAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGTCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTAATGCGTGACT
TCATCGAGCGACTCGAAAACCTACCTTTGGCGATGATTGCAGTGGATGAAGCGCACTGTATCTCGCAGTGGGGGCACGAT
TTCCGTCCCGAATACGCCGCGCTGGGTCAGCTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGTTTTGACCGTC
CGAATATTCGCTACAACCTGGTCGAGAAGCATAAGCCGATTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATCATTTACTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGTTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGCATCAACAAGCCGAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTACCTGCTGAAGCGATGATGTTGTACGACCCCGCAGA
CATCAGTTGGCTACGCCGCATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCAGAAGCGCAAACCTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAATACCGCGAGAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGCGTTAACCAAAGCTTTGGTATGACGTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGACAAGATCTCTACATACGGTATTGGCCGCGATCACAGTCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGACTGTTGTTTCAAAACATCACCCGAAACTCGACGTTGCAATTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTGTCGCTCGAGCTAGCGGTTCCTCGTTTGGATACCGCAGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCTGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCAACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

• Helicase conserved C-terminal domain (Helicase_C) (228-333)

• DEAD/DEAH box helicase (DEAD) (31-189)

• RQC domain (RQC) (409-517)

• HRDC domain (HRDC) (537-603)

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

3D structure

• AlphaFold DB: Q87KH0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.541	96.89	0.393