Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   C3Y93_RS12115 Genome accession   NZ_CP026616
Coordinates   2523463..2524320 (+) Length   285 a.a.
NCBI ID   WP_213064886.1    Uniprot ID   -
Organism   Acinetobacter sp. SWBY1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2518463..2529320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS12080 (C3Y93_12080) wrbA 2519146..2519742 (+) 597 WP_104853038.1 NAD(P)H:quinone oxidoreductase -
  C3Y93_RS12085 (C3Y93_12085) - 2520032..2520223 (+) 192 WP_019836921.1 hypothetical protein -
  C3Y93_RS12090 (C3Y93_12090) - 2520290..2520688 (-) 399 WP_104853039.1 hypothetical protein -
  C3Y93_RS12100 (C3Y93_12100) - 2520951..2521526 (-) 576 WP_104853040.1 xanthine phosphoribosyltransferase -
  C3Y93_RS12105 (C3Y93_12105) - 2521655..2522368 (-) 714 WP_019836925.1 DUF3108 domain-containing protein -
  C3Y93_RS12110 (C3Y93_12110) - 2522514..2523188 (-) 675 WP_104853292.1 hypothetical protein -
  C3Y93_RS12115 (C3Y93_12115) tonB2 2523463..2524320 (+) 858 WP_213064886.1 energy transducer TonB Machinery gene
  C3Y93_RS12120 (C3Y93_12120) ybeY 2524533..2525015 (-) 483 WP_104853042.1 rRNA maturation RNase YbeY -
  C3Y93_RS12125 (C3Y93_12125) - 2525059..2526132 (-) 1074 WP_004976193.1 PhoH family protein -
  C3Y93_RS12130 (C3Y93_12130) miaB 2526172..2527626 (-) 1455 WP_004976194.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32192.48 Da        Isoelectric Point: 5.8583

>NTDB_id=270924 C3Y93_RS12115 WP_213064886.1 2523463..2524320(+) (tonB2) [Acinetobacter sp. SWBY1]
MPSTQDWWKDPIFAAALLVAAVLHALILAVQFAAPQQSDAAVKEIAVSVRMSDAKVEDADFLAQADQQGSGTFREQHRIS
SDMPAPMTEQSAGEQELESLERMQQQRELDFEEKVLMTTLSWQKQAAENQRKKAMQELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDNTAGYMEKFRQKVEFYGNRYYPEQAKAQNLAGEVRLMVILNNNGGIRAIRLIESSGHAML
DEAAKASVRKAAPFGAFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=270924 C3Y93_RS12115 WP_213064886.1 2523463..2524320(+) (tonB2) [Acinetobacter sp. SWBY1]
ATGCCTTCTACGCAAGATTGGTGGAAAGATCCTATTTTTGCTGCAGCGTTGTTGGTGGCTGCTGTACTGCACGCATTAAT
TTTGGCCGTGCAGTTTGCTGCACCACAACAAAGCGATGCTGCGGTCAAGGAAATTGCAGTATCGGTACGCATGAGCGATG
CAAAAGTTGAAGATGCAGATTTCTTAGCTCAAGCCGACCAGCAAGGTTCAGGTACATTCCGTGAACAACATCGCATCTCG
AGTGACATGCCTGCGCCCATGACCGAACAAAGTGCAGGGGAGCAGGAATTGGAAAGTTTAGAGCGTATGCAGCAACAGCG
CGAATTAGACTTTGAAGAAAAAGTGTTGATGACCACGCTCAGTTGGCAGAAACAGGCGGCAGAAAATCAACGCAAAAAAG
CTATGCAGGAGTTGAATAGTCAATTTCAAGCTAAGGCGGCCATGGTTGCCAGTATTGAAGCGCAATATTTACAGCGCCAA
CAAAATTTTAGCCGTCAGCAAAAAATTAAAACCATCGATGGGATTCAGGCCAAGCAAGACAACACCGCTGGTTATATGGA
AAAATTCCGTCAAAAAGTCGAATTTTATGGTAACCGTTATTATCCAGAACAAGCCAAAGCACAGAATTTGGCAGGCGAAG
TACGTTTAATGGTGATTTTGAACAACAATGGTGGGATTCGTGCCATTCGTTTAATTGAAAGTTCAGGACATGCCATGCTA
GATGAAGCAGCCAAAGCTTCGGTGCGTAAAGCCGCACCTTTTGGTGCATTTGATGCCAAAATGAAAGATATTTCTGAATT
GCGGATTGTACGGACGTGGCGTTTTGACCCTGCTGAAGCTGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.326

97.895

0.698

Multiple sequence alignment