Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   C3Y93_RS06820 Genome accession   NZ_CP026616
Coordinates   1424270..1425058 (-) Length   262 a.a.
NCBI ID   WP_371971077.1    Uniprot ID   -
Organism   Acinetobacter sp. SWBY1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1419270..1430058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS06800 (C3Y93_06800) - 1420295..1420996 (-) 702 WP_104852469.1 YfgM family protein -
  C3Y93_RS06805 (C3Y93_06805) hisS 1421027..1422322 (-) 1296 WP_104852470.1 histidine--tRNA ligase -
  C3Y93_RS06810 (C3Y93_06810) ispG 1422326..1423447 (-) 1122 WP_104852471.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  C3Y93_RS06815 (C3Y93_06815) - 1423470..1424279 (-) 810 WP_104852472.1 helix-turn-helix domain-containing protein -
  C3Y93_RS06820 (C3Y93_06820) pilF 1424270..1425058 (-) 789 WP_371971077.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  C3Y93_RS06825 (C3Y93_06825) rlmN 1425134..1426366 (-) 1233 WP_004975094.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  C3Y93_RS06830 (C3Y93_06830) ndk 1426503..1426934 (-) 432 WP_004975092.1 nucleoside-diphosphate kinase -
  C3Y93_RS06835 (C3Y93_06835) iscX 1427097..1427297 (-) 201 WP_104852473.1 Fe-S cluster assembly protein IscX -
  C3Y93_RS06840 (C3Y93_06840) - 1427757..1428308 (-) 552 WP_104852474.1 phosphatase PAP2 family protein -
  C3Y93_RS06845 (C3Y93_06845) - 1428334..1429617 (-) 1284 WP_104852475.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29451.33 Da        Isoelectric Point: 8.7703

>NTDB_id=270900 C3Y93_RS06820 WP_371971077.1 1424270..1425058(-) (pilF) [Acinetobacter sp. SWBY1]
MAQITTVCISAIFAAACQTTAPTLGQKDPEKAVQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQE
GSKLNLEKADAYFKRAIAADPKNAQARNNYGTYLYQVERYNDAIEQLSIAGATLGYDQRFRALENVGRIYLKLGDIENAE
KSFKQALQANRDSYVSMLELSEILYLRQQFAPARQLYEQFVRAVGQKNQGARALWIGIRLARANGDQLGTQVLVNQLRAL
FPNSQEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 789 bp        

>NTDB_id=270900 C3Y93_RS06820 WP_371971077.1 1424270..1425058(-) (pilF) [Acinetobacter sp. SWBY1]
ATCGCACAAATTACAACTGTTTGTATTTCGGCAATTTTTGCTGCAGCTTGTCAAACCACAGCTCCAACCTTAGGGCAAAA
AGACCCTGAAAAAGCGGTGCAAGTACGTACGCAGTTGGCAGCAGAATACTTAAAAAATGGCGATTTAGACTCAGCCAAAC
GCGCACTTGATCAAGCTTTGGAAAGCGATTCACGTGATTCCACTGCTAATATGATGATGGGCGTGTTGCTGCAACAAGAA
GGCAGCAAGCTGAATTTAGAAAAAGCCGATGCGTATTTTAAGCGTGCCATTGCCGCTGACCCAAAAAATGCACAAGCGCG
TAACAACTATGGTACGTATTTATATCAAGTAGAACGCTATAATGATGCGATTGAGCAGCTCAGTATTGCAGGTGCAACAC
TGGGTTATGATCAACGCTTTAGAGCATTGGAAAATGTAGGTCGTATTTACTTGAAATTAGGCGATATAGAGAATGCCGAA
AAGTCATTCAAACAAGCCTTGCAAGCCAATCGCGATTCTTATGTTTCAATGTTAGAGTTGTCTGAAATTTTATATTTAAG
ACAACAATTTGCACCCGCTCGACAATTGTATGAACAGTTTGTACGTGCGGTCGGGCAAAAAAATCAGGGTGCGCGTGCCT
TATGGATAGGGATTCGTTTAGCACGTGCCAATGGCGATCAATTGGGAACTCAGGTTTTAGTGAACCAGCTGCGTGCATTA
TTTCCCAATAGCCAAGAATACCAACGTTATTTGCAATTACAGTACAGTACTGAGGCCGTATGGAAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_17)

(93-125)

Tetratricopeptide repeat (TPR_16)

(39-76)

Tetratricopeptide repeat (TPR_16)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

77.778

96.183

0.748
  pilF Acinetobacter baylyi ADP1

72.047

96.947

0.698

Multiple sequence alignment