Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   C3Y93_RS01715 Genome accession   NZ_CP026616
Coordinates   352580..353203 (+) Length   207 a.a.
NCBI ID   WP_104851896.1    Uniprot ID   -
Organism   Acinetobacter sp. SWBY1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347580..358203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS01680 (C3Y93_01680) kdsB 348032..348793 (+) 762 WP_104851892.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C3Y93_RS01685 (C3Y93_01685) - 348808..349797 (+) 990 WP_104851893.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  C3Y93_RS01690 (C3Y93_01690) - 349808..350149 (+) 342 WP_026438361.1 PilZ domain-containing protein -
  C3Y93_RS01695 (C3Y93_01695) - 350174..350947 (+) 774 WP_104851894.1 TatD family hydrolase -
  C3Y93_RS01700 (C3Y93_01700) - 351041..351655 (+) 615 WP_004976797.1 TetR/AcrR family transcriptional regulator -
  C3Y93_RS01705 (C3Y93_01705) - 351662..352213 (+) 552 WP_104851895.1 type II secretion system protein -
  C3Y93_RS01710 (C3Y93_01710) xcpV 352203..352583 (+) 381 WP_004976793.1 type II secretion system minor pseudopilin GspI Machinery gene
  C3Y93_RS01715 (C3Y93_01715) xcpW 352580..353203 (+) 624 WP_104851896.1 type II secretion system minor pseudopilin GspJ Machinery gene
  C3Y93_RS01720 (C3Y93_01720) gspK 353217..354200 (+) 984 WP_171287376.1 type II secretion system minor pseudopilin GspK -
  C3Y93_RS01725 (C3Y93_01725) - 354376..354972 (+) 597 WP_104851897.1 6-pyruvoyl trahydropterin synthase family protein -
  C3Y93_RS01730 (C3Y93_01730) ung 355010..355723 (+) 714 WP_104851898.1 uracil-DNA glycosylase -
  C3Y93_RS01735 (C3Y93_01735) - 355720..356841 (+) 1122 WP_004976784.1 enoyl-CoA hydratase/isomerase family protein -
  C3Y93_RS01740 (C3Y93_01740) tadA 356869..357360 (+) 492 WP_004976782.1 tRNA adenosine(34) deaminase TadA -
  C3Y93_RS01745 (C3Y93_01745) - 357462..357893 (+) 432 WP_004976780.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23871.33 Da        Isoelectric Point: 6.2606

>NTDB_id=270892 C3Y93_RS01715 WP_104851896.1 352580..353203(+) (xcpW) [Acinetobacter sp. SWBY1]
MSTKKGFTLVELLVAIAIFAVLSALGWKVFDYLAKVKDRNAMHEANLEQLQESYQQILRDMMQAVPLTANIKGQQQPALV
LQNGRFNFSKTGVTDPLQQGISPHERVEYQYRADEKKLYRLKYRNLHQTGNDQPESSVMLDEVEAFEIVVLNPNELSSWP
ESSVDSQQIEQLRLLPKGIKINLTVRDVQYEWIFSLLQTDFLKKKDN

Nucleotide


Download         Length: 624 bp        

>NTDB_id=270892 C3Y93_RS01715 WP_104851896.1 352580..353203(+) (xcpW) [Acinetobacter sp. SWBY1]
ATGAGTACAAAGAAAGGCTTCACTTTAGTTGAGTTGCTAGTCGCTATTGCAATTTTTGCAGTGCTGTCTGCTTTGGGTTG
GAAAGTATTTGATTATCTCGCCAAAGTCAAAGATCGCAATGCGATGCATGAAGCCAATTTAGAGCAGTTGCAAGAAAGCT
ATCAACAAATTTTACGTGACATGATGCAGGCTGTCCCACTAACGGCCAATATCAAAGGACAGCAACAACCTGCTTTAGTT
TTACAAAATGGACGTTTTAATTTTAGTAAAACAGGGGTGACCGATCCTTTGCAGCAGGGTATTTCACCCCATGAGCGCGT
AGAGTATCAATATCGTGCCGATGAAAAGAAATTGTATCGTTTAAAATATCGTAATTTGCATCAAACGGGCAATGATCAGC
CTGAGTCGAGCGTGATGTTAGATGAAGTCGAAGCTTTTGAGATTGTGGTATTAAATCCAAATGAATTAAGTAGTTGGCCT
GAAAGCAGTGTTGATTCGCAGCAAATTGAACAATTAAGGCTACTCCCGAAAGGAATAAAAATAAATTTAACCGTGCGTGA
CGTGCAATATGAATGGATATTTAGCTTATTGCAGACTGATTTTTTAAAGAAGAAAGACAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-193)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

59.701

97.101

0.58

Multiple sequence alignment