Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AZO_RS08695 Genome accession   NC_008702
Coordinates   1881549..1882919 (+) Length   456 a.a.
NCBI ID   WP_011765449.1    Uniprot ID   -
Organism   Azoarcus olearius     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1876549..1887919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZO_RS08665 (azo1710) - 1876813..1877142 (+) 330 WP_011765443.1 hypothetical protein -
  AZO_RS08670 (azo1711) tsaB 1877212..1877901 (+) 690 WP_011765444.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  AZO_RS08675 (azo1712) rimI 1877931..1878353 (+) 423 WP_011765445.1 ribosomal protein S18-alanine N-acetyltransferase -
  AZO_RS08680 (azo1713) - 1878350..1879201 (+) 852 WP_011765446.1 uracil-DNA glycosylase -
  AZO_RS08685 (azo1714) lplT 1879223..1880473 (-) 1251 WP_011765447.1 lysophospholipid transporter LplT -
  AZO_RS08690 (azo1715) - 1880629..1881549 (+) 921 WP_011765448.1 LysR family transcriptional regulator -
  AZO_RS08695 (azo1716) radA 1881549..1882919 (+) 1371 WP_011765449.1 DNA repair protein RadA Machinery gene
  AZO_RS08700 (azo1717) - 1882984..1883250 (-) 267 WP_011765450.1 hypothetical protein -
  AZO_RS20635 (azo1718) - 1883575..1884198 (+) 624 WP_011765451.1 DUF2795 domain-containing protein -
  AZO_RS20475 (azo1719) - 1884191..1885696 (+) 1506 WP_232502236.1 DUF4254 domain-containing protein -
  AZO_RS08715 (azo1720) - 1885699..1886832 (+) 1134 WP_011765453.1 glycosyltransferase family 9 protein -
  AZO_RS08720 (azo1721) - 1886756..1887814 (-) 1059 WP_011765454.1 glycosyltransferase family 9 protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48394.67 Da        Isoelectric Point: 6.9502

>NTDB_id=27089 AZO_RS08695 WP_011765449.1 1881549..1882919(+) (radA) [Azoarcus olearius]
MAKAKTVFVCTECGAQALRWQGQCPQCNAWNTLVESIAEPAPSAGSRFAALAGTTARLQALSELEPKEEPRTPTGIDEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALSHLAGTQAAVYVSGEESGEQVALRAQRLQLSASTLQLLAEINLERILAT
LREAKPRVAVIDSIQTIYSEALQSAPGSVAQVRECAAQLTRYAKQSGAALIIVGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVSNPSAIFLSQHAERVSGSCVLITQEGTRPLLVEIQALVDAAHSPN
PRRLSVGLEQTRLAMLLAVLHRHAGIVCFDQDVFVNAVGGVKIAEPAADLAILLAIVSSLRDKPLKHGLAVFGEVGLAGE
IRPAPRGQERLKEAAKLGFSAAIVPRANLPRQAVDGLQVIGVDRIEEALERVRELE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=27089 AZO_RS08695 WP_011765449.1 1881549..1882919(+) (radA) [Azoarcus olearius]
ATGGCCAAGGCGAAGACGGTTTTCGTCTGCACCGAATGCGGTGCGCAGGCGCTGCGCTGGCAGGGCCAGTGTCCGCAATG
CAATGCCTGGAACACCCTGGTCGAGAGCATCGCCGAGCCCGCCCCCAGCGCCGGCTCGCGCTTCGCCGCGCTGGCGGGCA
CCACCGCCCGGCTGCAGGCGCTGTCCGAACTCGAACCCAAGGAGGAGCCGCGCACGCCCACGGGCATCGACGAATTCGAC
CGCGTGCTGGGCGGGGGGCTGGTCGCGGGCGGCGTGGTATTGATCGGCGGCGACCCCGGCATCGGCAAATCCACACTGCT
GCTGCAGGCGCTGTCGCACCTGGCCGGCACGCAGGCGGCGGTCTATGTCAGCGGTGAAGAGTCCGGCGAGCAGGTGGCGC
TGCGCGCGCAACGCCTGCAACTGTCGGCCAGCACGCTGCAACTGCTGGCCGAGATCAACCTGGAACGCATCCTCGCCACG
CTGCGCGAGGCCAAGCCGCGCGTCGCGGTGATCGACTCGATCCAGACCATCTATTCCGAAGCGCTGCAGTCCGCGCCCGG
TTCGGTTGCGCAGGTGCGCGAGTGCGCCGCCCAGCTCACCCGCTACGCCAAGCAGAGCGGCGCCGCGCTGATCATCGTGG
GCCACGTCACCAAGGACGGTGCGCTCGCCGGCCCGCGCGTGCTGGAGCACATCGTCGATACCGTGCTGTACTTCGAGGGC
GATACCCACTCCAGCTTCCGGCTGGTGCGGGCGTTCAAGAACCGCTTCGGCGCGGTGAACGAACTCGGCGTGTTCGCGAT
GACCGAGCGCGGCCTGCGCGGGGTCTCCAATCCGTCGGCAATCTTCCTGTCGCAGCACGCCGAGCGCGTTTCCGGCAGCT
GCGTGCTGATCACGCAGGAGGGCACGCGCCCGCTGCTGGTCGAAATCCAGGCGCTGGTCGACGCCGCTCACAGCCCCAAC
CCGCGCCGCCTCAGCGTGGGGCTGGAGCAGACCCGGCTGGCGATGCTGCTCGCGGTGCTGCACCGTCACGCCGGCATCGT
CTGTTTCGACCAGGACGTGTTCGTCAATGCGGTCGGCGGGGTCAAGATCGCCGAACCGGCGGCCGATCTGGCGATCCTGC
TCGCCATCGTGTCTTCGCTGCGCGACAAGCCCTTGAAGCACGGCCTCGCGGTGTTTGGCGAAGTCGGCCTGGCGGGCGAA
ATCCGGCCCGCGCCGCGCGGGCAGGAGCGGCTGAAGGAGGCGGCCAAGCTCGGTTTCTCCGCCGCCATCGTGCCGCGCGC
CAACCTGCCGCGTCAGGCCGTCGACGGCCTGCAGGTAATCGGCGTAGACCGCATCGAGGAAGCGCTGGAGCGCGTGCGCG
AGCTGGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

99.561

0.498
  radA Streptococcus pneumoniae Rx1

46.389

100

0.465
  radA Streptococcus pneumoniae D39

46.389

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.389

100

0.465
  radA Streptococcus pneumoniae R6

46.389

100

0.465
  radA Streptococcus mitis SK321

46.389

100

0.465
  radA Streptococcus mitis NCTC 12261

46.171

100

0.463

Multiple sequence alignment