Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C4J63_RS13195 Genome accession   NZ_CP026612
Coordinates   2588073..2588702 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain DTU-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2583073..2593702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J63_RS13170 (C4J63_13170) ycbZ 2583474..2585234 (-) 1761 WP_000156518.1 Lon protease family protein -
  C4J63_RS13175 (C4J63_13175) matP 2585420..2585872 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C4J63_RS13180 (C4J63_13180) ompA 2585948..2586988 (-) 1041 WP_000750416.1 porin OmpA -
  C4J63_RS13190 (C4J63_13190) sulA 2587345..2587854 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C4J63_RS13195 (C4J63_13195) sxy/tfoX 2588073..2588702 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C4J63_RS13200 (C4J63_13200) yccS 2588665..2590827 (-) 2163 WP_000875061.1 YccS family putative transporter -
  C4J63_RS13205 (C4J63_13205) yccF 2590837..2591283 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C4J63_RS13210 (C4J63_13210) helD 2591406..2593460 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=270831 C4J63_RS13195 WP_000839153.1 2588073..2588702(+) (sxy/tfoX) [Escherichia coli strain DTU-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=270831 C4J63_RS13195 WP_000839153.1 2588073..2588702(+) (sxy/tfoX) [Escherichia coli strain DTU-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment