Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0A   Type   Regulator
Locus tag   C3496_RS25935 Genome accession   NZ_CP026608
Coordinates   5085555..5086349 (-) Length   264 a.a.
NCBI ID   WP_003161566.1    Uniprot ID   P52928
Organism   Bacillus anthracis strain HDZK-BYSB7     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context


Location: 5080555..5091349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3496_RS25915 (C3496_27245) - 5082358..5082591 (+) 234 WP_001190191.1 DUF2627 domain-containing protein -
  C3496_RS25920 (C3496_27250) - 5082640..5083368 (-) 729 WP_071728403.1 glycerophosphodiester phosphodiesterase -
  C3496_RS25925 (C3496_27255) - 5083419..5083565 (+) 147 WP_001247671.1 YycC family protein -
  C3496_RS25930 (C3496_27260) - 5083733..5085259 (-) 1527 WP_136444668.1 glycosyltransferase family 39 protein -
  C3496_RS25935 (C3496_27265) spo0A 5085555..5086349 (-) 795 WP_003161566.1 sporulation transcription factor Spo0A Regulator
  C3496_RS25940 (C3496_27275) spoIVB 5086637..5087935 (-) 1299 WP_002054681.1 SpoIVB peptidase -
  C3496_RS25945 (C3496_27280) recN 5088054..5089793 (-) 1740 WP_000947757.1 DNA repair protein RecN Machinery gene
  C3496_RS25950 (C3496_27285) argR 5090061..5090510 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence


Protein


Download         Length: 264 a.a.        Molecular weight: 29440.17 Da        Isoelectric Point: 7.4718

>NTDB_id=270716 C3496_RS25935 WP_003161566.1 5085555..5086349(-) (spo0A) [Bacillus anthracis strain HDZK-BYSB7]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=270716 C3496_RS25935 WP_003161566.1 5085555..5086349(-) (spo0A) [Bacillus anthracis strain HDZK-BYSB7]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAACAGCCAGATGTACTCG
TATTAGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCTTCATATTTTATATT
AAAACCATTTGATATGGAGAATTTAACTAGTCATATTCGTCAAGTGAGCGGTAAAGCGAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGATACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGCGTTGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCCGAGTTTATTGCAATGGTTGCGGATAAGCTTAGACTTGAACATAAGGCTAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P52928

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818


Multiple sequence alignment