Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   C3496_RS11855 Genome accession   NZ_CP026608
Coordinates   2309021..2309344 (-) Length   107 a.a.
NCBI ID   WP_000578877.1    Uniprot ID   A0A3P1BX61
Organism   Bacillus anthracis strain HDZK-BYSB7     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2304021..2314344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3496_RS11830 (C3496_12360) - 2304283..2305569 (+) 1287 WP_136444296.1 D-alanyl-D-alanine carboxypeptidase family protein -
  C3496_RS11835 (C3496_12365) sipW 2305762..2306331 (+) 570 WP_000767817.1 signal peptidase I SipW -
  C3496_RS11840 (C3496_12370) - 2306394..2306981 (+) 588 WP_000172849.1 CalY family protein -
  C3496_RS11845 (C3496_12375) - 2307143..2307949 (+) 807 WP_136444295.1 DUF4047 domain-containing protein -
  C3496_RS11850 (C3496_12380) calY 2308351..2308944 (+) 594 WP_136444294.1 biofilm matrix protein CalY -
  C3496_RS11855 (C3496_12385) sinR 2309021..2309344 (-) 324 WP_000578877.1 helix-turn-helix domain-containing protein Regulator
  C3496_RS11860 (C3496_12390) - 2309424..2309558 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  C3496_RS11865 (C3496_12395) inhA1 2309902..2312292 (+) 2391 WP_088314546.1 M6 family metalloprotease immune inhibitor InhA1 -
  C3496_RS11870 (C3496_12400) - 2312464..2313831 (+) 1368 WP_088313272.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.15 Da        Isoelectric Point: 8.5404

>NTDB_id=270706 C3496_RS11855 WP_000578877.1 2309021..2309344(-) (sinR) [Bacillus anthracis strain HDZK-BYSB7]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=270706 C3496_RS11855 WP_000578877.1 2309021..2309344(-) (sinR) [Bacillus anthracis strain HDZK-BYSB7]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P1BX61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment