Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   SGO_RS06135 Genome accession   NC_009785
Coordinates   1296675..1297139 (-) Length   154 a.a.
NCBI ID   WP_002904550.1    Uniprot ID   A0ABM5NIU9
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1291675..1302139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS06120 (SGO_1246) plsY 1292405..1293049 (+) 645 WP_012000642.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  SGO_RS06125 (SGO_1247) nt5e 1293067..1295253 (-) 2187 WP_012000643.1 cell surface ecto-5'-nucleotidase Nt5e -
  SGO_RS06130 (SGO_1248) - 1295394..1296662 (-) 1269 WP_012000644.1 dihydroorotase -
  SGO_RS06135 (SGO_1249) mutX 1296675..1297139 (-) 465 WP_002904550.1 NUDIX hydrolase Machinery gene
  SGO_RS06140 (SGO_1250) - 1297148..1297801 (-) 654 WP_012000645.1 uracil-DNA glycosylase -
  SGO_RS06145 (SGO_1251) - 1297836..1298588 (-) 753 WP_012000646.1 DUF4336 domain-containing protein -
  SGO_RS06150 (SGO_1252) - 1298591..1300144 (-) 1554 WP_041789697.1 glycosyltransferase family 39 protein -
  SGO_RS06155 (SGO_1253) pyrE 1300279..1300908 (-) 630 WP_012000648.1 orotate phosphoribosyltransferase -
  SGO_RS06160 (SGO_1254) pyrF 1300988..1301680 (-) 693 WP_012000649.1 orotidine-5'-phosphate decarboxylase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17831.21 Da        Isoelectric Point: 4.3092

>NTDB_id=27070 SGO_RS06135 WP_002904550.1 1296675..1297139(-) (mutX) [Streptococcus gordonii str. Challis substr. CH1]
MVQLATICYIDNGREFLMLHRNKKPNDVHAGKWIGVGGKLERGETPQECAAREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGELIDCNEGTLEWVPYDQVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=27070 SGO_RS06135 WP_002904550.1 1296675..1297139(-) (mutX) [Streptococcus gordonii str. Challis substr. CH1]
ATGGTTCAGTTAGCAACGATTTGTTATATTGATAATGGTCGGGAGTTTCTCATGCTACACCGCAACAAAAAGCCCAACGA
CGTTCATGCTGGGAAGTGGATTGGTGTCGGTGGCAAACTAGAGCGAGGAGAGACCCCGCAAGAATGCGCTGCACGTGAGA
TTTTAGAGGAAACAGGGCTAAAGGCCAAGCCTGTTCTCAAAGGTGTTATTACTTTTCCAGAATTTACTCCCGACTTGGAC
TGGTACACCTATGTTTTCAAGGTGACTGAGTTTGAGGGGGAACTGATTGACTGCAATGAAGGGACTTTGGAATGGGTGCC
CTATGACCAGGTTTTATCTAAACCAACCTGGGAAGGCGATCATACTTTTGTTGAGTGGCTTTTAGAAGACAAGCCTTTCT
TTTCAGCAAAGTTTGTTTATGACGGGGATAAGCTCTTGGATACGCAGGTGGACTTTTACGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(4-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

94.805

100

0.948

Multiple sequence alignment