Detailed information NTG0270660

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D0T88_RS17910
• Genome accession: NZ_CP031706
• Coordinates: 3714956..3715948 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain R1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3709956..3720948

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0T88_RS17885 (D0T88_19215)	ygbN	3710611..3711975 (+)	1365	WP_000104439.1	GntP family transporter	-
D0T88_RS17890 (D0T88_19220)	-	3712014..3712250 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
D0T88_RS17895 (D0T88_19225)	-	3712261..3713688 (-)	1428	WP_021534491.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
D0T88_RS17900 (D0T88_19230)	-	3713688..3714281 (-)	594	WP_000767716.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
D0T88_RS17905 (D0T88_19235)	-	3714428..3714835 (+)	408	WP_063113617.1	MarR family transcriptional regulator	-
D0T88_RS17910 (D0T88_19240)	rpoS	3714956..3715948 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
D0T88_RS17915 (D0T88_19245)	nlpD	3716011..3717105 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
D0T88_RS17920 (D0T88_19250)	pcm	3717290..3717916 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
D0T88_RS17925 (D0T88_19255)	surE	3717910..3718671 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
D0T88_RS17930 (D0T88_19260)	truD	3718652..3719701 (-)	1050	WP_194418255.1	tRNA pseudouridine(13) synthase TruD	-
D0T88_RS17935 (D0T88_19265)	ispF	3719698..3720177 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D0T88_RS17940 (D0T88_19270)	ispD	3720177..3720887 (-)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=270660 D0T88_RS17910 WP_000081550.1 3714956..3715948(-) (rpoS) [Escherichia coli strain R1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=270660 D0T88_RS17910 WP_000081550.1 3714956..3715948(-) (rpoS) [Escherichia coli strain R1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715