Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C3Y97_RS21730 Genome accession   NZ_CP026607
Coordinates   4274749..4275495 (-) Length   248 a.a.
NCBI ID   WP_000487009.1    Uniprot ID   -
Organism   Bacillus sp. DU-106     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4269749..4280495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y97_RS21715 (C3Y97_22270) dnaG 4270510..4272306 (-) 1797 WP_000528223.1 DNA primase -
  C3Y97_RS27910 - 4272388..4272531 (-) 144 WP_000479734.1 hypothetical protein -
  C3Y97_RS21720 (C3Y97_22285) - 4273167..4273979 (-) 813 WP_000368945.1 pyruvate, water dikinase regulatory protein -
  C3Y97_RS21725 (C3Y97_22290) - 4274009..4274641 (-) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  C3Y97_RS21730 (C3Y97_22295) recO 4274749..4275495 (-) 747 WP_000487009.1 DNA repair protein RecO Machinery gene
  C3Y97_RS21735 (C3Y97_22300) - 4275529..4275672 (-) 144 WP_000883924.1 YqzL family protein -
  C3Y97_RS21740 (C3Y97_22305) era 4275849..4276754 (-) 906 WP_001080230.1 GTPase Era -
  C3Y97_RS21745 (C3Y97_22310) - 4276747..4277145 (-) 399 WP_001086285.1 cytidine deaminase -
  C3Y97_RS21750 (C3Y97_22315) - 4277245..4277598 (-) 354 WP_000715466.1 diacylglycerol kinase family protein -
  C3Y97_RS21755 (C3Y97_22320) ybeY 4277595..4278065 (-) 471 WP_136363636.1 rRNA maturation RNase YbeY -
  C3Y97_RS21760 (C3Y97_22325) - 4278062..4280206 (-) 2145 WP_000091509.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28618.21 Da        Isoelectric Point: 8.0566

>NTDB_id=270659 C3Y97_RS21730 WP_000487009.1 4274749..4275495(-) (recO) [Bacillus sp. DU-106]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=270659 C3Y97_RS21730 WP_000487009.1 4274749..4275495(-) (recO) [Bacillus sp. DU-106]
ATGTTTCAAAAAGTTGAGGGTATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAAATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTAATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTAAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGCCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment