Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D0T88_RS17605 Genome accession   NZ_CP031706
Coordinates   3658309..3658824 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain R1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3653309..3663824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T88_RS17580 (D0T88_18910) ygaZ 3653708..3654445 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  D0T88_RS17585 (D0T88_18915) ygaH 3654435..3654770 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  D0T88_RS17590 (D0T88_18920) emrR 3654861..3655391 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  D0T88_RS17595 (D0T88_18925) emrA 3655518..3656690 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  D0T88_RS17600 (D0T88_18930) emrB 3656707..3658245 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  D0T88_RS17605 (D0T88_18935) luxS 3658309..3658824 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  D0T88_RS17610 (D0T88_18940) gshA 3658974..3660530 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  D0T88_RS17615 (D0T88_18945) yqaA 3660603..3661031 (-) 429 WP_001287454.1 YqaA family protein -
  D0T88_RS17620 (D0T88_18950) yqaB 3661028..3661594 (-) 567 WP_096961518.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  D0T88_RS17650 (D0T88_18980) csrA 3663052..3663237 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=270657 D0T88_RS17605 WP_001130210.1 3658309..3658824(-) (luxS) [Escherichia coli strain R1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=270657 D0T88_RS17605 WP_001130210.1 3658309..3658824(-) (luxS) [Escherichia coli strain R1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment