Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C3Y97_RS11965 Genome accession   NZ_CP026607
Coordinates   2315275..2315553 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus sp. DU-106     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2310275..2320553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y97_RS11945 (C3Y97_12270) - 2311949..2312758 (+) 810 WP_000678370.1 papain-like cysteine protease family protein -
  C3Y97_RS11950 (C3Y97_12275) - 2312784..2313386 (+) 603 WP_000517279.1 hypothetical protein -
  C3Y97_RS11955 (C3Y97_12280) - 2313630..2313881 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  C3Y97_RS11960 (C3Y97_12285) - 2314256..2315134 (+) 879 WP_000397979.1 helix-turn-helix domain-containing protein -
  C3Y97_RS11965 (C3Y97_12290) abrB 2315275..2315553 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  C3Y97_RS11975 (C3Y97_12300) - 2316169..2317419 (+) 1251 WP_001032358.1 hypothetical protein -
  C3Y97_RS11980 (C3Y97_12305) - 2317487..2318245 (+) 759 WP_121868692.1 TSUP family transporter -
  C3Y97_RS11985 (C3Y97_12310) - 2318498..2319157 (+) 660 WP_000876934.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=270649 C3Y97_RS11965 WP_000842216.1 2315275..2315553(+) (abrB) [Bacillus sp. DU-106]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=270649 C3Y97_RS11965 WP_000842216.1 2315275..2315553(+) (abrB) [Bacillus sp. DU-106]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment