Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D0T88_RS05145 Genome accession   NZ_CP031706
Coordinates   1094452..1095057 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain R1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1089452..1100057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T88_RS25365 - 1090006..1090104 (+) 99 Protein_1007 hypothetical protein -
  D0T88_RS05115 (D0T88_05565) rsmS 1090157..1090318 (-) 162 WP_001460555.1 pleiotropic regulatory protein RsmS -
  D0T88_RS05120 (D0T88_05570) priC 1090332..1090859 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  D0T88_RS05125 (D0T88_05575) ybaN 1090929..1091306 (+) 378 WP_001188905.1 DUF454 family protein -
  D0T88_RS05130 (D0T88_05585) apt 1091459..1092010 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  D0T88_RS05135 (D0T88_05590) dnaX 1092139..1094070 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  D0T88_RS05140 (D0T88_05595) ybaB 1094123..1094452 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  D0T88_RS05145 (D0T88_05600) recR 1094452..1095057 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  D0T88_RS05150 (D0T88_05605) htpG 1095167..1097041 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  D0T88_RS05155 (D0T88_05615) adk 1097222..1097866 (+) 645 WP_001220233.1 adenylate kinase -
  D0T88_RS05160 (D0T88_05620) hemH 1098102..1099064 (+) 963 WP_001250105.1 ferrochelatase -
  D0T88_RS05165 (D0T88_05625) aes 1099061..1100020 (-) 960 WP_137524599.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=270628 D0T88_RS05145 WP_001195025.1 1094452..1095057(+) (recR) [Escherichia coli strain R1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=270628 D0T88_RS05145 WP_001195025.1 1094452..1095057(+) (recR) [Escherichia coli strain R1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443