Detailed information NTG0270582

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: DXY22_RS16065
• Genome accession: NZ_CP031693
• Coordinates: 3148840..3149967 (-)
• Length: 375 a.a.
• NCBI ID: WP_015251664.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SRCM101393
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3143840..3154967

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DXY22_RS16055 (DXY22_03159)	spoIVCA	3144570..3146030 (-)	1461	WP_235701260.1	site-specific DNA recombinase SpoIVCA	-
DXY22_RS21205	-	3145988..3146166 (-)	179	Protein_3136	hypothetical protein	-
DXY22_RS16060 (DXY22_03160)	-	3146810..3147907 (-)	1098	WP_032726210.1	glycosyl hydrolase	-
DXY22_RS21210	-	3148409..3148498 (-)	90	Protein_3138	hypothetical protein	-
DXY22_RS16065 (DXY22_03163)	rapC	3148840..3149967 (-)	1128	WP_015251664.1	Rap family tetratricopeptide repeat protein	Regulator
DXY22_RS21215	-	3150361..3150441 (+)	81	Protein_3140	RNA polymerase subunit sigma	-
DXY22_RS16070 (DXY22_03165)	-	3150747..3151421 (+)	675	WP_015251663.1	TraX family protein	-
DXY22_RS16075	-	3151560..3151694 (+)	135	WP_015251662.1	hypothetical protein	-
DXY22_RS16080 (DXY22_03166)	-	3151805..3151964 (+)	160	Protein_3143	hypothetical protein	-
DXY22_RS16085 (DXY22_03167)	-	3152334..3154100 (+)	1767	WP_015251660.1	T7SS effector LXG polymorphic toxin	-
DXY22_RS16090 (DXY22_03168)	-	3154114..3154578 (+)	465	WP_015251659.1	SMI1/KNR4 family protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44234.49 Da
• Isoelectric Point: 5.6727

>NTDB_id=270582 DXY22_RS16065 WP_015251664.1 3148840..3149967(-) (rapC) [Bacillus subtilis strain SRCM101393]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIDE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYIDFKRYEKSQPHLEKALELSRELNNKRLISSALYNLGTNFADSGDYEQAEV
FMKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQHGVNQTI
EYLEKNKNYSYVEDIACETADAYANLKEFETSYVYHQKMVETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=270582 DXY22_RS16065 WP_015251664.1 3148840..3149967(-) (rapC) [Bacillus subtilis strain SRCM101393]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTTCC
GGATGCAGAGATTTTAAAGGCAGAGGTGGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCCTAATGAAATTCCGTCATCAACTCATGTTAGATTATTTGGAACCAGTAACAACACGTATAAGACCAACTATTGACGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGTCTTTTGTCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCATTGGATATTTATAATCAATATGAACTTTATAAGGTGCGGAAAGTTCAATGTATGTTTGTTATTTCAGG
GAATTATATAGATTTTAAACGTTATGAAAAAAGTCAGCCGCATCTTGAAAAAGCATTAGAGTTATCGAGGGAATTGAATA
ACAAGAGGTTGATTAGTTCTGCGTTATATAATTTAGGCACAAATTTTGCTGACAGTGGCGATTACGAGCAAGCGGAAGTA
TTCATGAAGCAAGCTGTGGAGATAACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAAGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGTTATTTAAAAGCTCTTTACGTCGATGCGGTGGATCAACATGGAGTTAATCAAACCATA
GAATACTTAGAGAAGAATAAGAACTATTCTTATGTTGAAGACATTGCCTGTGAGACCGCAGATGCTTATGCAAACTTAAA
AGAATTTGAAACATCTTATGTTTACCATCAGAAAATGGTTGAAACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (193-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	43.883	100	0.44
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397