Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   DXY22_RS14625 Genome accession   NZ_CP031693
Coordinates   2895985..2897475 (-) Length   496 a.a.
NCBI ID   WP_048655119.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM101393     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2890985..2902475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY22_RS14595 (DXY22_02868) gudB 2891132..2892406 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  DXY22_RS14600 (DXY22_02869) mecB 2892562..2893146 (-) 585 WP_003230533.1 genetic competence negative regulator -
  DXY22_RS14605 (DXY22_02870) ypbG 2893305..2894084 (-) 780 WP_015251802.1 metallophosphoesterase -
  DXY22_RS14610 (DXY22_02871) ypbF 2894171..2894614 (-) 444 WP_003230531.1 YpbF family protein -
  DXY22_RS14615 (DXY22_02872) claE 2894677..2895405 (-) 729 WP_048655120.1 LysM peptidoglycan-binding domain-containing protein -
  DXY22_RS14620 (DXY22_02873) ypbD 2895356..2895958 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  DXY22_RS14625 (DXY22_02874) recS 2895985..2897475 (-) 1491 WP_048655119.1 ATP-dependent DNA helicase RecQ Machinery gene
  DXY22_RS14630 (DXY22_02875) gmmB 2897468..2898526 (-) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  DXY22_RS14635 (DXY22_02876) fdxA 2898792..2899040 (+) 249 WP_003225461.1 ferredoxin -
  DXY22_RS14640 (DXY22_02877) fmnP 2899080..2899652 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  DXY22_RS14645 (DXY22_02878) serA 2900149..2901726 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56480.99 Da        Isoelectric Point: 6.4518

>NTDB_id=270563 DXY22_RS14625 WP_048655119.1 2895985..2897475(-) (recS) [Bacillus subtilis strain SRCM101393]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRASFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=270563 DXY22_RS14625 WP_048655119.1 2895985..2897475(-) (recS) [Bacillus subtilis strain SRCM101393]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGGAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGCATCATTTTTGCTTCA
GCGTGATGGCTGTTTAAGGCAGGCACTATTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996