Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   DXY22_RS09965 Genome accession   NZ_CP031693
Coordinates   1934753..1935889 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM101393     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1929753..1940889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY22_RS09945 (DXY22_01950) uxaA 1930203..1931696 (+) 1494 WP_015252294.1 altronate dehydratase family protein -
  DXY22_RS09950 (DXY22_01951) yjnA 1931735..1932499 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  DXY22_RS09955 (DXY22_01952) bstD 1932724..1933188 (-) 465 WP_153952134.1 DinB family protein -
  DXY22_RS09960 (DXY22_01953) yjoB 1933337..1934608 (+) 1272 WP_015252292.1 ATPase YjoB -
  DXY22_RS09965 (DXY22_01954) rapC 1934753..1935889 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  DXY22_RS09970 (DXY22_01955) phrA 1935879..1936013 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  DXY22_RS09975 (DXY22_01956) yjpA 1936044..1936301 (-) 258 WP_003232731.1 YciI family protein -
  DXY22_RS09980 (DXY22_01957) xlyB 1936422..1937375 (+) 954 WP_015252290.1 N-acetylmuramoyl-L-alanine amidase -
  DXY22_RS09985 (DXY22_01958) yjqA 1937415..1937792 (-) 378 WP_014479546.1 PH domain-containing protein -
  DXY22_RS09990 (DXY22_01959) pghB 1937898..1938500 (+) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  DXY22_RS09995 (DXY22_01960) xpdC 1938577..1939413 (+) 837 WP_003245071.1 manganese catalase family protein -
  DXY22_RS10000 (DXY22_01961) xkdA 1939457..1940053 (-) 597 WP_015252288.1 ImmA/IrrE family metallo-endopeptidase -
  DXY22_RS10005 (DXY22_01962) xre 1940216..1940557 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=270533 DXY22_RS09965 WP_015252291.1 1934753..1935889(+) (rapC) [Bacillus subtilis strain SRCM101393]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=270533 DXY22_RS09965 WP_015252291.1 1934753..1935889(+) (rapC) [Bacillus subtilis strain SRCM101393]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCTTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418