Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   DXY22_RS05745 Genome accession   NZ_CP031693
Coordinates   1124704..1125138 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM101393     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1119704..1130138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY22_RS05715 (DXY22_01117) ydaD 1120352..1121212 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  DXY22_RS05720 (DXY22_01118) lyxE 1121228..1121731 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  DXY22_RS05725 (DXY22_01119) ydaF 1121817..1122368 (+) 552 WP_003246691.1 GNAT family protein -
  DXY22_RS05730 (DXY22_01120) ydaG 1122446..1122868 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  DXY22_RS05735 (DXY22_01121) amj 1123374..1124183 (+) 810 WP_061891247.1 lipid II flippase Amj -
  DXY22_RS05740 (DXY22_01122) ydzA 1124228..1124518 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  DXY22_RS05745 (DXY22_01123) lrpC 1124704..1125138 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  DXY22_RS05750 (DXY22_01124) topB 1125203..1127386 (+) 2184 WP_076458431.1 DNA topoisomerase III -
  DXY22_RS05755 (DXY22_01125) ephJ 1127589..1128677 (+) 1089 WP_101172137.1 lipoprotein YdaJ -
  DXY22_RS05760 (DXY22_01126) epsK 1128658..1129509 (+) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=270504 DXY22_RS05745 WP_003246585.1 1124704..1125138(+) (lrpC) [Bacillus subtilis strain SRCM101393]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=270504 DXY22_RS05745 WP_003246585.1 1124704..1125138(+) (lrpC) [Bacillus subtilis strain SRCM101393]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCTCCACCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1