Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   DXY22_RS01020 Genome accession   NZ_CP031693
Coordinates   207862..208995 (-) Length   377 a.a.
NCBI ID   WP_015251020.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM101393     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 202862..213995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY22_RS00980 (DXY22_00192) ywnA 203026..203427 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  DXY22_RS00985 (DXY22_00193) ureC 203562..205271 (-) 1710 WP_003243090.1 urease subunit alpha -
  DXY22_RS00990 (DXY22_00194) ureB 205268..205642 (-) 375 WP_015251023.1 urease subunit beta -
  DXY22_RS00995 (DXY22_00195) ureA 205639..205956 (-) 318 WP_003227724.1 urease subunit gamma -
  DXY22_RS01000 - 206151..206309 (-) 159 WP_144050515.1 hypothetical protein -
  DXY22_RS01005 (DXY22_00196) - 206482..206745 (-) 264 WP_015251022.1 branched-chain amino acid ABC transporter substrate-binding protein -
  DXY22_RS01010 (DXY22_00197) csbD 206966..207154 (-) 189 WP_015251021.1 stress response protein CsbD -
  DXY22_RS01015 (DXY22_00198) - 207227..207706 (-) 480 WP_003244390.1 hypothetical protein -
  DXY22_RS01020 (DXY22_00199) rapC 207862..208995 (-) 1134 WP_015251020.1 response regulator aspartate phosphatase RapB Regulator
  DXY22_RS01025 (DXY22_00200) moaA 209187..210212 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  DXY22_RS01030 (DXY22_00201) fdhD 210228..211016 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  DXY22_RS01035 (DXY22_00202) - 211249..211410 (-) 162 WP_003227706.1 hypothetical protein -
  DXY22_RS01040 (DXY22_00203) ywmD 211505..212179 (-) 675 WP_003243553.1 VWA domain-containing protein -
  DXY22_RS01045 - 212232..212372 (-) 141 WP_003227702.1 hypothetical protein -
  DXY22_RS01050 (DXY22_00204) ywmC 212503..213186 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45038.16 Da        Isoelectric Point: 4.7546

>NTDB_id=270469 DXY22_RS01020 WP_015251020.1 207862..208995(-) (rapC) [Bacillus subtilis strain SRCM101393]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=270469 DXY22_RS01020 WP_015251020.1 207862..208995(-) (rapC) [Bacillus subtilis strain SRCM101393]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCAGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424