Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CH556_RS06730 Genome accession   NZ_CP031692
Coordinates   1367385..1368806 (+) Length   473 a.a.
NCBI ID   WP_116945469.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P595-8370     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1362385..1373806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH556_RS06710 (CH556_06710) - 1364339..1365331 (+) 993 WP_013525795.1 DNA cytosine methyltransferase -
  CH556_RS06715 (CH556_06715) - 1365334..1366290 (+) 957 WP_116945468.1 HaeIII family restriction endonuclease -
  CH556_RS09365 (CH556_06720) - 1366284..1366494 (+) 211 Protein_1266 hypothetical protein -
  CH556_RS06725 (CH556_06725) - 1366497..1367372 (+) 876 WP_050829127.1 hypothetical protein -
  CH556_RS06730 (CH556_06730) sbcB 1367385..1368806 (+) 1422 WP_116945469.1 exodeoxyribonuclease I Machinery gene
  CH556_RS06735 (CH556_06735) phoR 1369495..1370772 (-) 1278 WP_116945470.1 phosphate regulon sensor histidine kinase PhoR -
  CH556_RS06740 (CH556_06740) phoB 1370769..1371464 (-) 696 WP_006996031.1 phosphate regulon transcriptional regulator PhoB -
  CH556_RS06745 (CH556_06745) pstB 1371561..1372328 (-) 768 WP_116945471.1 phosphate ABC transporter ATP-binding protein PstB -
  CH556_RS06750 (CH556_06750) pstA 1372338..1373186 (-) 849 WP_116945472.1 phosphate ABC transporter permease PstA -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54310.54 Da        Isoelectric Point: 5.1891

>NTDB_id=270449 CH556_RS06730 WP_116945469.1 1367385..1368806(+) (sbcB) [Haemophilus influenzae strain P595-8370]
MAKDFSFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQECNEKGLSEPEF
AANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCT
WVAPLSWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCPILAPAKTLLPETANR
LGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKR
ILELLFHYRARHFYKTLTRAEQIKWQKYRQNKLEKSAVEFQSGLQRLAEEHSDNSEKLSLLQQVYEYGIKLLG

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=270449 CH556_RS06730 WP_116945469.1 1367385..1368806(+) (sbcB) [Haemophilus influenzae strain P595-8370]
ATGGCAAAAGATTTCAGCTTTTTTATTTACGATTATGAAAGTTTTGGTGTAAATCCAGCAACAGATCGCCCTGCGCAATT
TGCGGGTATTCGTACAGATGCTGATTTTAATATCATTGGCGAACCAATAATGTTTTATTGTAAACAAACCAACGATTATT
TACCGGCTCCTGAAGCCGTAATGGTCACAGGAATTACGCCTCAAGAATGTAATGAAAAGGGGCTTTCAGAGCCTGAATTC
GCCGCAAATATCTTAGCAGAATTTTCCCAACCCAATACTTGTGTCATGGGTTATAACAATATTCGCTATGATGATGAAAT
GACGCGTTATACGTTTTATCGTAATTTTATTGATCCTTATGAATACAGCTGGAAAAATGGGAATTCACGCTGGGATTTGT
TAGATTTAGTACGAGCTTGTTATGCCCTGCGTCCAGAAGGAATTAATTGGGCTTATGACGATGATGGAATGCCAAGTTTC
CGCTTAGAAAAACTCACTAAAGCAAATGGTATTGAGCATGAAAATGCTCACGATGCCATGGCGGATGTATATGCAACTAT
TGCTATGGCGAAATTAATTAAAGAAAAACAACCTAAATTATTCCAATATTTCTTTGAAAATCGCGGTAAAAAAGAAATCG
AAAAATTAGTTGATACAGGAGCGATGACACCTTTAGTGCATGTTTCTGGAATGCTAGGGAATTATCGTGGAAATTGCACT
TGGGTTGCACCTTTATCTTGGCATCCGACAAATCAAAATGCATTAATTGTGTGTGATTTAACTGGCGATATCGATAATTT
ATTAGCCAAAAGTGCGGATGAATTACGGACAGATTTATATACCAAAAAATCTGAATTAGAAGAAAGAGGAGTTTCATCCG
TTCCGTTAAAACTTGTGCATATTAATAAATGTCCTATTTTAGCACCAGCTAAAACTTTGTTACCAGAAACAGCAAATCGA
TTGGGTATTGATCGACAATTATGCTTGGATAATCTTGCAAAATTACGAGCATCTTTTGATATTCGTGAAAAAGTGGCGGA
TATTTTTAATGAAGAACGTCAATTTGCATCGAATGATAATGTAGAAACTGAGTTATACAATGGCTTTTTTAGCAATGCTG
ATAAAAATAATATGGCTATTTTACGTAGTTTACCTGCAGAAAAATTATCTGAACATGGTTTAGCTTTTGAAGATAAACGT
ATCCTTGAATTATTGTTCCATTATCGTGCTCGCCACTTTTATAAAACCCTCACACGCGCTGAACAAATTAAATGGCAAAA
ATACCGACAGAATAAACTTGAAAAAAGTGCGGTAGAGTTTCAATCAGGTTTACAACGTTTAGCCGAGGAACATTCAGATA
ATTCTGAAAAACTATCTTTGCTACAACAAGTATATGAATATGGTATAAAATTACTAGGTTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-468)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

55.15

98.52

0.543

Multiple sequence alignment