Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CH556_RS02630 Genome accession   NZ_CP031692
Coordinates   523185..523688 (-) Length   167 a.a.
NCBI ID   WP_005662536.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P595-8370     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 518185..528688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH556_RS02605 (CH556_02605) - 518320..519372 (+) 1053 WP_116945299.1 extracellular solute-binding protein -
  CH556_RS02610 (CH556_02610) hslU 519442..520776 (-) 1335 WP_116945298.1 HslU--HslV peptidase ATPase subunit -
  CH556_RS02615 (CH556_02615) hslV 520787..521314 (-) 528 WP_065245049.1 ATP-dependent protease subunit HslV -
  CH556_RS02620 (CH556_02620) aphA 521536..522243 (+) 708 WP_005649426.1 acid phosphatase AphA -
  CH556_RS02625 (CH556_02625) - 522290..523083 (-) 794 Protein_499 IS3 family transposase -
  CH556_RS02630 (CH556_02630) luxS 523185..523688 (-) 504 WP_005662536.1 S-ribosylhomocysteine lyase Regulator
  CH556_RS02635 (CH556_02635) - 524018..524491 (-) 474 WP_116945297.1 YqaA family protein -
  CH556_RS02640 (CH556_02640) - 524491..525093 (-) 603 WP_005652027.1 beta-phosphoglucomutase family hydrolase -
  CH556_RS02645 (CH556_02645) - 525209..525586 (+) 378 WP_116945296.1 PRD domain-containing protein -
  CH556_RS02650 (CH556_02650) rsmG 525726..526337 (+) 612 WP_005662540.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  CH556_RS02655 (CH556_02655) - 526463..526837 (+) 375 WP_110437506.1 ATP synthase subunit I -
  CH556_RS02660 (CH556_02660) atpB 526874..527662 (+) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  CH556_RS02665 (CH556_02665) atpE 527718..527972 (+) 255 WP_005652035.1 F0F1 ATP synthase subunit C -
  CH556_RS02670 (CH556_02670) atpF 528022..528492 (+) 471 WP_005652038.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18571.22 Da        Isoelectric Point: 4.9925

>NTDB_id=270420 CH556_RS02630 WP_005662536.1 523185..523688(-) (luxS) [Haemophilus influenzae strain P595-8370]
MPLLDSFKVDHTKMNAPAVRIAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=270420 CH556_RS02630 WP_005662536.1 523185..523688(-) (luxS) [Haemophilus influenzae strain P595-8370]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGCGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTGTTTGCTGGATTTATGCGCGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737