Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CH576_RS02940 Genome accession   NZ_CP031691
Coordinates   589766..590368 (-) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain P615-8618     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584766..595368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH576_RS02920 (CH576_02920) - 585130..586800 (+) 1671 WP_005649337.1 fructose-specific PTS transporter subunit EIIC -
  CH576_RS02930 (CH576_02930) secG 587345..587686 (-) 342 WP_005669259.1 preprotein translocase subunit SecG -
  CH576_RS02935 (CH576_02935) - 587795..589750 (-) 1956 WP_116939817.1 DNA topoisomerase III -
  CH576_RS02940 (CH576_02940) recR 589766..590368 (-) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  CH576_RS02945 (CH576_02945) - 590498..590827 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  CH576_RS02950 (CH576_02950) - 590980..591825 (-) 846 WP_112088382.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  CH576_RS02955 (CH576_02955) - 591897..594491 (-) 2595 WP_116941736.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=270359 CH576_RS02940 WP_005626527.1 589766..590368(-) (recR) [Haemophilus influenzae strain P615-8618]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=270359 CH576_RS02940 WP_005626527.1 589766..590368(-) (recR) [Haemophilus influenzae strain P615-8618]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGTCATTGTTCACAGTGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACAGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGCATTGGTCCCCGTGAAATTGGTTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAGTCTTTTCACGAAGTAATTCTTGCAACAAATCCAACAGTGGAAGGCGATGCAACGGCAAACTACATCGCTGAAATG
TGCCGCCAGCACAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43