Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   MFDS1004839_RS14995 Genome accession   NZ_CP026569
Coordinates   2877930..2878535 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain MFDS1004839     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 2872930..2883535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFDS1004839_RS14980 (MFDS1004839_02788) helD 2873147..2875201 (-) 2055 WP_000420505.1 DNA helicase IV -
  MFDS1004839_RS14985 (MFDS1004839_02789) - 2875325..2875771 (+) 447 WP_001261222.1 YccF domain-containing protein -
  MFDS1004839_RS14990 (MFDS1004839_02790) yccS 2875790..2877943 (+) 2154 WP_000950876.1 YccS family putative transporter -
  MFDS1004839_RS14995 (MFDS1004839_02791) sxy/tfoX 2877930..2878535 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  MFDS1004839_RS15000 (MFDS1004839_02792) sulA 2878752..2879261 (+) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  MFDS1004839_RS15005 (MFDS1004839_02793) ompA 2879618..2880670 (+) 1053 WP_001674965.1 porin OmpA -
  MFDS1004839_RS15010 (MFDS1004839_02794) matP 2880742..2881194 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  MFDS1004839_RS15015 (MFDS1004839_02795) - 2881380..2883140 (+) 1761 WP_000156448.1 AAA family ATPase -

Sequence


Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=270331 MFDS1004839_RS14995 WP_001202375.1 2877930..2878535(-) (sxy/tfoX) [Salmonella enterica strain MFDS1004839]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=270331 MFDS1004839_RS14995 WP_001202375.1 2877930..2878535(-) (sxy/tfoX) [Salmonella enterica strain MFDS1004839]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751


Multiple sequence alignment