Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   BKM03_RS26490 Genome accession   NZ_CP026562
Coordinates   5542256..5542666 (-) Length   136 a.a.
NCBI ID   WP_002551738.1    Uniprot ID   A0AAT9SFQ2
Organism   Pseudomonas avellanae strain R2leaf     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5537256..5547666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM03_RS26475 (BKM03_26475) - 5539204..5541246 (-) 2043 WP_005621029.1 methyl-accepting chemotaxis protein -
  BKM03_RS26480 (BKM03_26480) - 5541290..5541829 (-) 540 WP_003377194.1 chemotaxis protein CheW -
  BKM03_RS26485 (BKM03_26485) pilH 5541844..5542209 (-) 366 WP_003377196.1 twitching motility response regulator PilH -
  BKM03_RS26490 (BKM03_26490) pilG 5542256..5542666 (-) 411 WP_002551738.1 twitching motility response regulator PilG Regulator
  BKM03_RS26495 (BKM03_26495) gshB 5542911..5543870 (+) 960 WP_003377199.1 glutathione synthase -
  BKM03_RS26500 (BKM03_26500) - 5544148..5545050 (+) 903 WP_005736950.1 energy transducer TonB -
  BKM03_RS26505 (BKM03_26505) - 5545126..5545698 (+) 573 WP_003377203.1 YqgE/AlgH family protein -
  BKM03_RS26510 (BKM03_26510) ruvX 5545698..5546138 (+) 441 WP_003377205.1 Holliday junction resolvase RuvX -
  BKM03_RS26515 (BKM03_26515) pyrR 5546237..5546749 (+) 513 WP_005736951.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14943.42 Da        Isoelectric Point: 8.5283

>NTDB_id=270281 BKM03_RS26490 WP_002551738.1 5542256..5542666(-) (pilG) [Pseudomonas avellanae strain R2leaf]
MEQHASALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADNHPRIIFVDIMMPRLDGYQTCALIKNNRAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFVAAEQHIS

Nucleotide


Download         Length: 411 bp        

>NTDB_id=270281 BKM03_RS26490 WP_002551738.1 5542256..5542666(-) (pilG) [Pseudomonas avellanae strain R2leaf]
ATGGAACAACACGCCTCTGCATTGAAAGTCATGGTCATCGATGACTCGAAGACCATCCGCCGCACCGCCGAAACGCTGCT
TAAAAACGCAGGCTGCGAAGTCATCACTGCGATAGACGGTTTTGACGCGCTGGCCAAGATTGCCGATAACCACCCACGAA
TCATATTCGTCGATATCATGATGCCGCGCCTGGATGGCTACCAGACGTGCGCGCTGATCAAGAACAACCGTGCATTCAAG
TCCACGCCGGTCATCATGCTGTCCTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGGCGAATCGTCGGTTCCGATCAGTT
TTTGACAAAGCCTTTCAGCAAGGAAGAACTGCTCAGCGCGATCAAGGCTCATGTGCCGGGCTTCGTTGCAGCAGAACAAC
ACATATCGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

91.912

0.691

Multiple sequence alignment