Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BKM03_RS24940 Genome accession   NZ_CP026562
Coordinates   5194537..5195904 (-) Length   455 a.a.
NCBI ID   WP_003381736.1    Uniprot ID   Q0EDX1
Organism   Pseudomonas avellanae strain R2leaf     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5189537..5200904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM03_RS24920 (BKM03_24920) yjiA 5190489..5191466 (-) 978 WP_005736701.1 GTPase -
  BKM03_RS24925 (BKM03_24925) - 5191562..5191759 (-) 198 WP_002555232.1 YbdD/YjiX family protein -
  BKM03_RS24930 (BKM03_24930) - 5191787..5193862 (-) 2076 WP_005736703.1 carbon starvation CstA family protein -
  BKM03_RS24935 (BKM03_24935) - 5194148..5194516 (+) 369 WP_005620567.1 PilZ domain-containing protein -
  BKM03_RS24940 (BKM03_24940) radA 5194537..5195904 (-) 1368 WP_003381736.1 DNA repair protein RadA Machinery gene
  BKM03_RS24945 (BKM03_24945) mscL 5196099..5196545 (+) 447 WP_003381737.1 large-conductance mechanosensitive channel protein MscL -
  BKM03_RS24950 (BKM03_24950) - 5196730..5197506 (-) 777 WP_005736704.1 ferredoxin--NADP reductase -
  BKM03_RS24955 (BKM03_24955) - 5197844..5198077 (+) 234 WP_005736705.1 helix-turn-helix transcriptional regulator -
  BKM03_RS24960 (BKM03_24960) - 5198207..5199331 (+) 1125 WP_003381743.1 class I SAM-dependent methyltransferase -
  BKM03_RS24965 (BKM03_24965) - 5199419..5199586 (-) 168 WP_003381744.1 DUF2474 domain-containing protein -
  BKM03_RS24970 (BKM03_24970) cydB 5199608..5200615 (-) 1008 WP_003381747.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48839.40 Da        Isoelectric Point: 7.1315

>NTDB_id=270280 BKM03_RS24940 WP_003381736.1 5194537..5195904(-) (radA) [Pseudomonas avellanae strain R2leaf]
MAKAKRLYGCTECGATFPKWAGQCADCGAWNTLVETMIESGAAAPPSGRTGWTGSQAQIRTLAEVSVEEIPRFSTNSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=270280 BKM03_RS24940 WP_003381736.1 5194537..5195904(-) (radA) [Pseudomonas avellanae strain R2leaf]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAGTGCGGCGCGACATTTCCCAAGTGGGCGGGCCAGTGTGCTGATTG
CGGCGCCTGGAACACACTGGTCGAAACCATGATAGAAAGCGGTGCCGCAGCGCCTCCCAGCGGGCGCACCGGCTGGACCG
GCTCGCAGGCGCAGATCAGAACCCTGGCTGAAGTCAGCGTTGAAGAGATCCCGCGGTTTTCCACCAACTCCGCCGAACTC
GACAGAGTGCTCGGTGGCGGTTTGGTGGATGGTTCTGTGGTGCTGATCGGCGGCGACCCTGGCATCGGCAAGTCGACAAT
TCTGTTGCAAACGCTGTGTAACATCGCCCAGCGCATGCCTGCGCTGTATGTCACCGGCGAGGAATCCCAACAGCAGGTGG
CCATGCGCGCTCGCCGTCTGGGCCTGCCACAGGACAAACTGCGGGTCATGACCGAAACCTGCATCGAAACCATTATTGCC
ACCGCCAAGGTCGAGAAGCCCAAGGTAATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAATTGCAGTCCGCACC
GGGTGGCGTGTCGCAAGTGCGCGAAAGCGCCGCCTTGCTGGTGCGCTACGCCAAGCAGAGTGGCACCGCGATTTTCCTGG
TGGGGCATGTCACCAAGGAAGGCGCACTGGCGGGGCCGCGTGTGCTTGAGCACATGGTCGATACCGTGCTGTATTTCGAG
GGCGAGTCGGACGGTCGTCTGCGTTTGCTTCGCGCCGTAAAGAACCGTTTCGGCGCGGTAAACGAACTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTGTCCAATCCGTCGGCGATTTTTCTGACCCGTGCGCAGGAAGAAGTGCCCGGCA
GCGTGGTCATGGCCACATGGGAAGGCACCCGACCGATGCTGGTCGAAGTTCAGGCGCTGGTGGATGACAGCCATATGTCC
AATCCGCGTCGTGTAACCCTGGGCCTGGATCAGAACCGTCTGGCGATGCTGCTGGCGGTGCTGCACCGGCATGGCGGCAT
TCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGCGTGAAGGTGCTGGAAACCGCGTCCGATCTGGCCTTGA
TGGCCGCCGTCATGTCCAGCCTGCGCAATCGCCCGCTGCCGCATGACTTGCTGGTGTTTGGCGAGGTGGGGCTGTCGGGT
GAGGTCAGGCCGGTGCCCAGCGGGCAGGAGCGCTTGAAAGAGGCCGCCAAGCACGGCTTCAAACGGGCCATCGTGCCGAA
AGGCAACGCGCCGAAAGAAGCGCCTCCCGGTCTGCAGATCATCGCCGTAACGCGTCTGGAACAGGCGCTGGATGCTTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0EDX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.492
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468

Multiple sequence alignment