Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SGO_RS00150 Genome accession   NC_009785
Coordinates   32120..32902 (+) Length   260 a.a.
NCBI ID   WP_011999584.1    Uniprot ID   A8AU93
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27120..37902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS00130 (SGO_0027) rplI 28704..29156 (+) 453 WP_011999581.1 50S ribosomal protein L9 -
  SGO_RS00135 (SGO_0028) dnaB 29183..30538 (+) 1356 WP_008808062.1 replicative DNA helicase -
  SGO_RS00140 (SGO_0029) - 30540..30830 (+) 291 WP_011999582.1 Veg family protein -
  SGO_RS00145 (SGO_0030) - 30955..32142 (+) 1188 WP_011999583.1 pyridoxal phosphate-dependent aminotransferase -
  SGO_RS00150 (SGO_0031) recO 32120..32902 (+) 783 WP_011999584.1 DNA repair protein RecO Machinery gene
  SGO_RS00155 (SGO_0032) plsX 32899..33900 (+) 1002 WP_011999585.1 phosphate acyltransferase PlsX -
  SGO_RS00160 (SGO_0033) - 33897..34136 (+) 240 WP_008808067.1 acyl carrier protein -
  SGO_RS00165 (SGO_0034) purC 34289..34996 (+) 708 WP_011999586.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29997.34 Da        Isoelectric Point: 5.1631

>NTDB_id=27026 SGO_RS00150 WP_011999584.1 32120..32902(+) (recO) [Streptococcus gordonii str. Challis substr. CH1]
MMQSITSKALVLYNRNFREDDKLVKIFTEQAGKRMFFVKHATNSKLSPVIQPLTLANLLMKVNDDGLSYIQDYQDVQPFT
RINSDLFIMAYATYVAALADASIPDSQPDAALFAFLTKTLELMEEGLDHEILTNIFEVQILSRFGVSLNFHECVFCHRTG
LPFDFSFKFSGVLCPDHYREDDRRCHLHPNIPFLLDQFQAVEYSTLETISLKAEIKQQLREFIDQIYDDYVGIHLKSKKF
IDSLGDWGSILKDKENKESI

Nucleotide


Download         Length: 783 bp        

>NTDB_id=27026 SGO_RS00150 WP_011999584.1 32120..32902(+) (recO) [Streptococcus gordonii str. Challis substr. CH1]
ATGATGCAGTCCATCACGAGTAAAGCGCTAGTACTCTATAATCGAAACTTTCGTGAAGATGACAAATTAGTAAAAATATT
TACAGAACAGGCTGGCAAGCGTATGTTTTTCGTGAAACATGCCACCAACTCTAAGCTGAGTCCTGTTATTCAGCCCCTTA
CCTTGGCAAATTTGCTTATGAAGGTGAATGATGATGGTCTGAGTTATATTCAGGATTACCAAGATGTCCAGCCTTTCACT
CGGATTAATAGTGATTTGTTCATCATGGCCTATGCGACCTATGTCGCTGCCTTGGCAGACGCTAGTATTCCGGACAGTCA
ACCAGACGCTGCTCTTTTTGCTTTTCTGACAAAAACCTTGGAGCTAATGGAAGAAGGTTTAGACCATGAGATTTTGACAA
ATATTTTTGAAGTTCAGATTTTGTCCCGTTTTGGTGTTTCTCTGAATTTCCACGAATGTGTCTTTTGTCATCGAACTGGA
CTACCTTTTGATTTTTCCTTTAAATTCAGTGGTGTCCTCTGTCCGGATCACTATCGTGAGGACGATCGTCGCTGCCATCT
CCACCCCAATATACCATTTTTACTTGATCAATTTCAGGCAGTGGAATATAGCACTCTGGAAACTATTTCACTAAAAGCAG
AAATTAAGCAACAACTACGCGAATTTATAGATCAAATTTACGACGATTATGTTGGAATTCATTTGAAATCAAAGAAATTC
ATTGATTCTCTAGGAGACTGGGGAAGTATTTTAAAAGATAAAGAAAATAAGGAGTCAATATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(2-79)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AU93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

74.118

98.077

0.727

Multiple sequence alignment