Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CH582_RS02700 Genome accession   NZ_CP031689
Coordinates   545250..545753 (-) Length   167 a.a.
NCBI ID   WP_005662536.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P621-7028     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 540250..550753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH582_RS02675 (CH582_02675) - 540387..541439 (+) 1053 WP_114893714.1 extracellular solute-binding protein -
  CH582_RS02680 (CH582_02680) hslU 541510..542841 (-) 1332 WP_116941752.1 HslU--HslV peptidase ATPase subunit -
  CH582_RS02685 (CH582_02685) hslV 542852..543379 (-) 528 WP_005649427.1 ATP-dependent protease subunit HslV -
  CH582_RS02690 (CH582_02690) aphA 543599..544306 (+) 708 WP_005649426.1 acid phosphatase AphA -
  CH582_RS02695 (CH582_02695) - 544353..545148 (-) 796 Protein_505 IS3 family transposase -
  CH582_RS02700 (CH582_02700) luxS 545250..545753 (-) 504 WP_005662536.1 S-ribosylhomocysteine lyase Regulator
  CH582_RS02705 (CH582_02705) - 546083..546556 (-) 474 WP_116939799.1 YqaA family protein -
  CH582_RS02710 (CH582_02710) - 546556..547158 (-) 603 WP_005652027.1 beta-phosphoglucomutase family hydrolase -
  CH582_RS02715 (CH582_02715) - 547274..547651 (+) 378 WP_005652029.1 PRD domain-containing protein -
  CH582_RS02720 (CH582_02720) rsmG 547791..548402 (+) 612 WP_005652031.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  CH582_RS02725 (CH582_02725) - 548528..548902 (+) 375 WP_005659757.1 ATP synthase subunit I -
  CH582_RS02730 (CH582_02730) atpB 548939..549727 (+) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  CH582_RS02735 (CH582_02735) atpE 549783..550037 (+) 255 WP_005652035.1 F0F1 ATP synthase subunit C -
  CH582_RS02740 (CH582_02740) atpF 550087..550557 (+) 471 WP_005666460.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18571.22 Da        Isoelectric Point: 4.9925

>NTDB_id=270230 CH582_RS02700 WP_005662536.1 545250..545753(-) (luxS) [Haemophilus influenzae strain P621-7028]
MPLLDSFKVDHTKMNAPAVRIAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=270230 CH582_RS02700 WP_005662536.1 545250..545753(-) (luxS) [Haemophilus influenzae strain P621-7028]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAATGCACCTGCAGTACGCATTGCAAAAACGATGCGCAC
GCCAAAAGGTGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737