Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   CH582_RS01290 Genome accession   NZ_CP031689
Coordinates   257828..259687 (-) Length   619 a.a.
NCBI ID   WP_116939677.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P621-7028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 252828..264687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH582_RS01280 (CH582_01280) lptD 253592..255940 (+) 2349 WP_116942042.1 LPS assembly protein LptD -
  CH582_RS01285 (CH582_01285) proS 256025..257743 (-) 1719 WP_116942041.1 proline--tRNA ligase -
  CH582_RS01290 (CH582_01290) recQ 257828..259687 (-) 1860 WP_116939677.1 DNA helicase RecQ Machinery gene
  CH582_RS01295 (CH582_01295) cyaY 259689..259994 (-) 306 WP_005655473.1 iron donor protein CyaY -
  CH582_RS01300 (CH582_01300) lptM 260092..260208 (+) 117 WP_005652274.1 LPS translocon maturation chaperone LptM -
  CH582_RS01305 (CH582_01305) lysA 260256..261503 (+) 1248 WP_105894136.1 diaminopimelate decarboxylase -
  CH582_RS01310 (CH582_01310) - 261708..262334 (+) 627 WP_005652269.1 response regulator -
  CH582_RS01315 (CH582_01315) - 262396..262836 (-) 441 WP_105894135.1 DUF2489 domain-containing protein -
  CH582_RS01320 (CH582_01320) yihI 262840..263400 (-) 561 WP_105894134.1 Der GTPase-activating protein YihI -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 70043.51 Da        Isoelectric Point: 8.1655

>NTDB_id=270220 CH582_RS01290 WP_116939677.1 257828..259687(-) (recQ) [Haemophilus influenzae strain P621-7028]
MLDSPLPSKIIEKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISL
MKDQVDQLQANGIEADFLNSSQTLAQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVCFIAIDEAHCISQWGHD
FRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGK
SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSI
ESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPC
NNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIAVLRGMHNQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLI
HLGFVQQVISELNPTLQLTESAKVILKGEEPLELAMPRISAISKIAHNPQRQGVANYDKDLFARLRFLRKQIADKENIPP
YIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGQPFMALIQEHKVILANAQNND

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=270220 CH582_RS01290 WP_116939677.1 257828..259687(-) (recQ) [Haemophilus influenzae strain P621-7028]
ATGCTGGATTCTCCTTTACCATCAAAAATAATAGAAAAACCGACCGCACTTTCTGTTTTGAAATCGGTTTTCGGTTATCA
ATCTTTCCGTAAAGGGCAGGAAGAAGTTATTAATGCTGCTTTAAATGGACAAGATGCGTTGGTGGTAATGGCAACGGGGA
ATGGCAAATCGCTTTGTTACCAAATTCCCGCACTTTGTTTTGATGGTTTAACTTTAGTGATTTCTCCGCTGATTTCCTTG
ATGAAAGATCAAGTGGATCAGCTGCAAGCTAATGGAATTGAGGCGGATTTTCTTAATTCTAGTCAGACTTTAGCACAGCA
GCAACAAGTACAAAATAAGCTTATTTCTGGGCAACTTAAACTACTTTATGTGTCGCCAGAAAAAGTGATGACGAACAGTT
TCTTTCAACTTATTTCTTATAGCAAAGTCTGCTTTATTGCGATTGATGAAGCACATTGTATTTCTCAATGGGGGCATGAC
TTTCGCCCTGAATATACCCAGCTTGGCGGTTTAAAAGCCAGTTTCCCTGATGCGCCGATTATGGCACTTACGGCAACGGC
AGATTATGCGACTCAACAAGATATTCTGCGGCATCTTAATCTGAAAAATCTGCACAAATACATTGGTAGTTTTGATCGAC
CAAATATTCGTTATACCTTGGAAGAAAAATACAAACCTATGGAGCAACTGACACGTTTTGTGTTGGCTCAAAAGGGTAAG
AGTGGGATTATTTATTGCAACAGCAGAAATAAGGTTGAGCGAATTGCGGAAAGTTTACGCAATAAAGGTGTCTCTGCTGC
TGCTTACCACGCAGGAATGGAAACGGCAATTCGTGAACGTGTGCAACAGGATTTTCAGCGTGATAATGTTCAAGTAGTAG
TCGCAACCATTGCTTTTGGAATGGGGATTAATAAATCCAATGTGCGCTTTGTTGCCCATTTTGATTTACCACGTAGCATT
GAATCTTACTATCAAGAAACAGGTCGAGCAGGACGTGATGATTTGCCTGCCGAGGCGGTTTTGTTTTATGAACCAGCTGA
TTACGCTTGGTTACAAAAAATTCTCTTCGAAAAACCAGAAACGCCACAGCGTCAGATTGAGCAACATAAATTAGAAGCTA
TTGGGGAATTTGCGGAAAGCCAGACTTGTCGCCGTTTAGTTCTTCTCAATTATTTTGGCGAGCATCGACAAACACCATGC
AATAACTGTGATATTTGCCTTGATCCTCCTAAAAAATATGATGGTTTAGTCGATGCGCAAAAAGTAATGTCTACTATTTA
TCGAGTGGGACAATGTTTTGGTGCACATTATGTGATTGCGGTGTTGCGTGGCATGCACAATCAGAAAATTATTGAACGCC
AACACCATAAACTTTCAGTGTATGGCATTGGAAAAGATAAAAGTAAAGAGCATTGGCAGTCCGTCATTCGTCAGCTTATT
CATTTGGGTTTTGTGCAACAGGTTATTAGTGAATTAAATCCAACGTTGCAACTTACTGAAAGTGCGAAAGTGATTTTGAA
AGGCGAAGAACCGTTAGAATTGGCAATGCCTCGTATTTCTGCAATCAGTAAAATTGCTCATAATCCACAACGTCAAGGTG
TTGCAAATTACGATAAGGATTTATTTGCACGCTTGCGTTTCTTACGCAAACAAATTGCCGATAAAGAAAATATTCCGCCG
TACATTGTCTTTAATGATGCGACGTTGCAAGAAATGGCACAATATATGCCAACAAGCAATATTGAAATGTTGCAAATTAA
TGGCGTGGGCTCTATCAAGTTAGAGCGGTTTGGTCAGCCGTTTATGGCATTGATTCAAGAACATAAGGTAATTTTGGCGA
ATGCGCAAAATAATGACTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(539-605)

RecQ zinc-binding (RecQ_Zn_bind)

(347-407)

RQC domain (RQC)

(409-518)

DEAD/DEAH box helicase (DEAD)

(32-191)

Helicase conserved C-terminal domain (Helicase_C)

(228-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.43

96.284

0.38