Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C3Z06_RS07595 Genome accession   NZ_CP026544
Coordinates   1579868..1581235 (+) Length   455 a.a.
NCBI ID   WP_011516158.1    Uniprot ID   Q1LNJ2
Organism   Cupriavidus metallidurans strain Ni-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1574868..1586235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Z06_RS07575 (C3Z06_07575) - 1574889..1575842 (+) 954 WP_029308082.1 uracil-DNA glycosylase -
  C3Z06_RS07580 (C3Z06_07580) - 1575823..1576932 (+) 1110 WP_104669803.1 DUF1853 family protein -
  C3Z06_RS07585 (C3Z06_07585) lplT 1576982..1578301 (-) 1320 WP_011516156.1 lysophospholipid transporter LplT -
  C3Z06_RS07590 (C3Z06_07590) alr 1578761..1579867 (+) 1107 WP_011516157.1 alanine racemase -
  C3Z06_RS07595 (C3Z06_07595) radA 1579868..1581235 (+) 1368 WP_011516158.1 DNA repair protein RadA Machinery gene
  C3Z06_RS07600 (C3Z06_07600) - 1581310..1583406 (-) 2097 WP_029308079.1 hypothetical protein -
  C3Z06_RS07605 (C3Z06_07605) - 1583713..1584198 (+) 486 WP_008649101.1 disulfide bond formation protein B -
  C3Z06_RS07610 (C3Z06_07610) - 1584303..1586225 (-) 1923 WP_029308078.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48492.76 Da        Isoelectric Point: 7.2043

>NTDB_id=270206 C3Z06_RS07595 WP_011516158.1 1579868..1581235(+) (radA) [Cupriavidus metallidurans strain Ni-2]
MAKTKTVYTCTECGGTTPRWAGQCPQCNAWNTLVETVADSGSSAARRFQPLATSAVVRKLSEIEAADVPRFSTGIDEFDR
VLGGGLVSGGVVLIGGDPGIGKSTLLLQTLANLSASRRVLYVSGEESAAQIALRAHRLGVEAATLGLLPEIQLEKIQATL
EADKPEVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKSTGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGD
THSSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEEQVAGSCVLVTQEGTRPLLVEVQALVDTANVPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEI
RPSPRGQERLKEAAKLGFTMAVIPKANAPKQRIDGLEVIAVDRLEQAIDRVRHLD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=270206 C3Z06_RS07595 WP_011516158.1 1579868..1581235(+) (radA) [Cupriavidus metallidurans strain Ni-2]
ATGGCCAAGACCAAGACGGTATACACATGCACCGAGTGCGGCGGCACCACGCCGCGCTGGGCGGGCCAGTGCCCACAGTG
CAACGCCTGGAACACGCTGGTGGAAACGGTGGCGGATTCGGGTTCGTCCGCGGCACGCCGCTTCCAGCCGCTGGCGACGT
CCGCTGTGGTGCGCAAGCTGTCGGAAATCGAGGCGGCCGATGTGCCACGCTTCTCGACCGGCATCGACGAATTCGACCGC
GTGCTTGGCGGCGGCCTGGTGTCGGGTGGGGTGGTGCTGATCGGCGGGGACCCCGGCATCGGTAAATCGACCCTGCTGCT
GCAGACGCTGGCCAACCTGTCGGCCAGCCGGCGCGTGCTCTATGTGAGCGGCGAGGAATCCGCCGCCCAGATCGCGCTGC
GCGCCCATCGCCTGGGCGTGGAGGCCGCCACGCTGGGCCTGCTGCCCGAGATTCAGTTGGAGAAGATCCAGGCCACGCTC
GAGGCCGACAAGCCCGAGGTGGCCGTGATCGACTCGATCCAGACGGTTTACTCGGAGGCGCTGACGTCCGCGCCGGGCTC
CGTGGCACAGGTACGCGAATGCGCGGCGCAACTGACGCGGATCGCCAAGAGTACCGGCATCACGATCATCCTGGTCGGCC
ACGTAACCAAGGAAGGCAGCCTGGCCGGCCCGCGCGTGCTCGAACACATCGTGGACACGGTGCTGTACTTCGAGGGGGAC
ACCCATTCCTCGCACCGCTTGATCCGGGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGTGTCTTCGCGATGAC
CGAGCGCGGCCTGCGCGGCATCAGCAATCCGTCTGCGCTGTTCCTCTCCCAGCATGAGGAGCAGGTGGCCGGTTCCTGCG
TGCTGGTGACCCAGGAGGGCACGCGGCCATTGCTGGTCGAAGTGCAGGCGCTGGTCGACACCGCCAACGTGCCGAATCCG
CGTCGGCTGGCCGTGGGCCTCGAACAGAACCGGCTGGCGATGCTGCTGGCCGTACTGCATCGTCACGCGGGCATCGCGTG
TTTCGACCAGGACGTCTTCCTGAACGCGGTGGGCGGGGTCAAGATCACCGAGCCGGCCGCCGACCTGGCCGTGCTGCTGT
CGATTCATTCGTCGATGCGCAACAAGCCGCTGCCTCGCGGTCTGGTGGTGTTCGGCGAAGTGGGCCTGGCGGGAGAAATC
CGCCCGAGCCCGCGCGGACAGGAGCGGCTCAAGGAAGCCGCCAAGCTTGGTTTCACGATGGCGGTGATCCCGAAGGCCAA
TGCGCCCAAGCAGCGGATCGACGGCCTGGAGGTCATCGCGGTGGACCGGCTGGAACAGGCCATCGACCGGGTCAGGCATC
TGGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(62-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1LNJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.985

100

0.512
  radA Streptococcus mitis SK321

46.638

100

0.473
  radA Streptococcus pneumoniae D39

46.537

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.537

100

0.473
  radA Streptococcus pneumoniae R6

46.537

100

0.473
  radA Streptococcus pneumoniae Rx1

46.537

100

0.473
  radA Streptococcus mitis NCTC 12261

46.32

100

0.47

Multiple sequence alignment