Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   C3Z06_RS01815 Genome accession   NZ_CP026544
Coordinates   368479..369957 (-) Length   492 a.a.
NCBI ID   WP_011515189.1    Uniprot ID   Q1LRN7
Organism   Cupriavidus metallidurans strain Ni-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 363479..374957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Z06_RS01785 (C3Z06_01785) - 363851..364504 (-) 654 WP_011515184.1 LON peptidase substrate-binding domain-containing protein -
  C3Z06_RS01790 (C3Z06_01790) rapZ 364551..365441 (-) 891 WP_011515185.1 RNase adapter RapZ -
  C3Z06_RS01795 (C3Z06_01795) - 365556..365897 (-) 342 WP_017511023.1 PsiF family protein -
  C3Z06_RS01800 (C3Z06_01800) hprK 366103..367074 (-) 972 WP_008650955.1 HPr(Ser) kinase/phosphatase -
  C3Z06_RS01805 (C3Z06_01805) ptsN 367143..367598 (-) 456 WP_017511024.1 PTS IIA-like nitrogen regulatory protein PtsN -
  C3Z06_RS01810 (C3Z06_01810) hpf 368075..368428 (-) 354 WP_008650960.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  C3Z06_RS01815 (C3Z06_01815) rpoN/rpoN1 368479..369957 (-) 1479 WP_011515189.1 RNA polymerase factor sigma-54 Machinery gene
  C3Z06_RS01820 (C3Z06_01820) lptB 370081..370872 (-) 792 WP_011515190.1 LPS export ABC transporter ATP-binding protein -
  C3Z06_RS01825 (C3Z06_01825) lptA 370898..371542 (-) 645 WP_011515191.1 lipopolysaccharide transport periplasmic protein LptA -
  C3Z06_RS01830 (C3Z06_01830) lptC 371605..372231 (-) 627 WP_011515192.1 LPS export ABC transporter periplasmic protein LptC -
  C3Z06_RS01835 (C3Z06_01835) - 372235..373218 (-) 984 WP_011515193.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54773.03 Da        Isoelectric Point: 4.9624

>NTDB_id=270201 C3Z06_RS01815 WP_011515189.1 368479..369957(-) (rpoN/rpoN1) [Cupriavidus metallidurans strain Ni-2]
MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALTENPLLERENDWIESPLRVAADGSVNVQSAPAPASSEPQ
GNGDDRANGANGEDDSYGDSAGDDYGSDWSLDDFARRPQGDDDEKTPMQLREAEPTLREYLMEQLTPLKISTRDKGLAIF
LIESLDDDGYLGATLDEICSELPKELEFEVDEVQAILTLLQSFDPPGVGARNAAECLTLQLRRLQHPQRDLALSIVNHHL
ELLAVRDYTRLKKALQVDEIALKAAHDLIRSLAPYPGHAYSRPEADFVVPDVFVRKSGSSWIAQLNPDVMPRLRINDMYA
QILRGAKGEAGAAGLQQKLQEARWLIKNIQQRFDTILRVAQAIVERQRNFFSHGEIAMRPLVLREIADTLGLHESTISRV
TTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLIGAEEPRNPLSDSRIAELLGEQGFVVARRTVAKYREA
LKIPAVNLRKTL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=270201 C3Z06_RS01815 WP_011515189.1 368479..369957(-) (rpoN/rpoN1) [Cupriavidus metallidurans strain Ni-2]
ATGAAACCATCGCTTCAGCTTCGACTTTCCCAGCATCTGGCTCTGACTCCTCAACTGCAGCAGTCCATCCGGCTGCTGCA
GTTATCCACACTGGAGCTGCAACAGGAAGTCGAGCAGGCGCTGACCGAGAATCCACTGCTCGAACGCGAGAACGACTGGA
TCGAAAGCCCGCTGCGCGTGGCCGCGGACGGGTCGGTCAACGTGCAAAGCGCCCCGGCGCCAGCATCTTCCGAACCGCAA
GGTAACGGCGACGATCGCGCGAACGGCGCCAATGGCGAAGACGACAGCTACGGCGACAGCGCGGGTGACGATTACGGCAG
CGACTGGAGCCTGGACGATTTCGCTCGCCGGCCTCAGGGCGATGATGACGAGAAGACGCCGATGCAGCTTCGCGAAGCGG
AACCCACGCTGCGCGAATACCTGATGGAACAGCTCACGCCGCTGAAGATCTCCACGCGTGACAAGGGCCTGGCCATCTTC
CTGATCGAGTCGCTTGACGACGACGGCTACCTGGGCGCAACGCTCGACGAGATCTGTTCGGAACTGCCCAAGGAACTCGA
ATTCGAAGTCGATGAAGTGCAGGCGATACTGACCCTGCTGCAGAGCTTCGACCCGCCTGGCGTGGGTGCGCGCAACGCGG
CGGAATGCCTCACCCTGCAACTGCGCCGTCTGCAACATCCGCAGCGGGACCTTGCATTATCGATCGTCAACCACCACCTG
GAGTTATTGGCCGTGCGTGACTACACGCGGCTCAAGAAAGCCCTGCAGGTTGACGAAATTGCACTTAAGGCCGCGCACGA
TCTGATCCGCTCGCTCGCACCGTATCCCGGACATGCCTACAGCCGTCCGGAAGCGGACTTCGTGGTACCGGATGTGTTCG
TGCGCAAGAGTGGCAGTAGCTGGATCGCACAGCTCAATCCCGACGTGATGCCGCGTCTGCGCATCAACGACATGTACGCG
CAGATTTTGCGCGGTGCAAAAGGGGAAGCGGGCGCGGCCGGGCTGCAGCAGAAGCTCCAGGAGGCGCGGTGGCTCATCAA
GAACATTCAGCAGCGTTTCGACACGATCCTGCGTGTTGCGCAGGCAATTGTGGAGCGTCAAAGGAACTTTTTCTCGCACG
GGGAAATCGCGATGCGCCCCTTGGTTTTGCGGGAGATTGCCGATACACTGGGTCTACACGAGTCGACCATTTCCCGGGTG
ACTACGAATAAATACATGGCCACGCCGATGGGTACTTTCGAGTTGAAGTACTTCTTTGGTAGCCACGTCTCCACGGAGAC
TGGCGGCGCGGCCTCATCCACGGCGATCCGCGCGCTGATCAAGCAACTGATAGGAGCCGAAGAACCCAGGAATCCCCTTT
CCGACAGCCGCATCGCCGAGTTGCTGGGCGAACAGGGCTTTGTGGTCGCACGCCGCACGGTGGCCAAGTACCGCGAAGCG
CTGAAGATCCCCGCAGTCAATCTCCGCAAGACTTTGTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-319)

Sigma-54, DNA binding domain (Sigma54_DBD)

(335-490)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

78

100

0.793

Multiple sequence alignment