Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C3438_RS17205 Genome accession   NZ_CP026533
Coordinates   3284720..3285004 (+) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus velezensis strain DKU_NT_04     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3279720..3290004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS17180 (C3438_17180) - 3280966..3281874 (+) 909 WP_025649506.1 ketopantoate reductase family protein -
  C3438_RS17185 (C3438_17185) - 3281903..3283135 (-) 1233 WP_104843313.1 aminopeptidase -
  C3438_RS17190 (C3438_17190) - 3283236..3283370 (-) 135 WP_003154559.1 protein YkpC -
  C3438_RS17195 (C3438_17195) mreBH 3283442..3284449 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  C3438_RS17205 (C3438_17205) abrB 3284720..3285004 (+) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  C3438_RS17210 (C3438_17210) - 3285177..3286481 (+) 1305 WP_014417634.1 ATP-binding protein -
  C3438_RS17215 (C3438_17215) - 3286483..3287310 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase family protein -
  C3438_RS17220 (C3438_17220) ktrC 3287351..3288016 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  C3438_RS17225 (C3438_17225) ade 3288165..3289898 (+) 1734 WP_038457873.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=270184 C3438_RS17205 WP_014417633.1 3284720..3285004(+) (abrB) [Bacillus velezensis strain DKU_NT_04]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=270184 C3438_RS17205 WP_014417633.1 3284720..3285004(+) (abrB) [Bacillus velezensis strain DKU_NT_04]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment