Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   C3438_RS17090 Genome accession   NZ_CP026533
Coordinates   3264226..3264822 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain DKU_NT_04     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3259226..3269822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS17060 (C3438_17060) - 3259440..3259895 (+) 456 WP_014417614.1 flavodoxin -
  C3438_RS17065 (C3438_17065) dapD 3259977..3260687 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  C3438_RS17070 (C3438_17070) - 3260758..3261882 (+) 1125 WP_063636606.1 N-acetyldiaminopimelate deacetylase -
  C3438_RS17075 (C3438_17075) - 3261943..3262188 (+) 246 WP_003154596.1 YkuS family protein -
  C3438_RS17080 (C3438_17080) - 3262222..3263028 (-) 807 WP_025649509.1 mechanosensitive ion channel family protein -
  C3438_RS17085 (C3438_17085) - 3263316..3263774 (+) 459 WP_017417682.1 TlpA disulfide reductase family protein -
  C3438_RS17090 (C3438_17090) rok 3264226..3264822 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  C3438_RS17095 (C3438_17095) - 3264843..3265835 (-) 993 WP_014417619.1 hypothetical protein -
  C3438_RS17100 (C3438_17100) - 3265981..3266582 (+) 602 Protein_3284 molybdenum cofactor guanylyltransferase -
  C3438_RS17105 (C3438_17105) - 3266634..3267653 (+) 1020 WP_063636608.1 molybdopterin-synthase adenylyltransferase MoeB -
  C3438_RS17110 (C3438_17110) glp 3267671..3268963 (+) 1293 WP_014417621.1 gephyrin-like molybdotransferase Glp -
  C3438_RS17115 (C3438_17115) mobB 3268924..3269445 (+) 522 WP_104843308.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=270183 C3438_RS17090 WP_003154591.1 3264226..3264822(+) (rok) [Bacillus velezensis strain DKU_NT_04]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=270183 C3438_RS17090 WP_003154591.1 3264226..3264822(+) (rok) [Bacillus velezensis strain DKU_NT_04]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTAAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCGGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATATCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment